RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 LPAR1Q92633 364 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 RRP36Q96EU6 259 aaKnown RBP17.65■□□□□ 0.42
TRIM28-209ENST00000597423 VCPKMTQ9H867 229 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 GPCPD1Q9NPB8 672 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 SEC63Q9UGP8 760 aaKnown RBP17.65■□□□□ 0.42
TRIM28-209ENST00000597423 ZHX2Q9Y6X8 837 aa17.65■□□□□ 0.42
TRIM28-209ENST00000597423 A0A1W2PRG0 241 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 VPS37CA5D8V6 355 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 BRD1O95696 1058 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 GOLGA8HP0CJ92 632 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 ZSCAN22P10073 491 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 FUT2Q10981 343 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 SAFBQ15424 915 aaKnown RBP eCLIP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 CHADLQ6NUI6 762 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 FAM177A1Q8N128 213 aaPredicted RBP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 CMTR1Q8N1G2 835 aaKnown RBP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 RBM46Q8TBY0 533 aaKnown RBP17.64■□□□□ 0.41
TRIM28-209ENST00000597423 CHURC1Q8WUH1 139 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 MYH8P13535 1937 aa17.64■□□□□ 0.41
TRIM28-209ENST00000597423 ECE1P42892 770 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 TRAF1Q13077 416 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 SPP2Q13103 211 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 IKQ13123 557 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-209ENST00000597423 C2orf69Q8N8R5 385 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 FBXO18Q8NFZ0 1043 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 RIOX1Q9H6W3 641 aa17.63■□□□□ 0.41
TRIM28-209ENST00000597423 GPBP1L1Q9HC44 474 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-209ENST00000597423 FRMPD2Q68DX3 1309 aaPredicted RBP17.63■□□□□ 0.41
TRIM28-209ENST00000597423 PLA2G6O60733 806 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 POTEIP0CG38 1075 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 POTEJP0CG39 1038 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 BACE1P56817 501 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 VGLL4Q14135 290 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 PFKFB3Q16875 520 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-209ENST00000597423 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-209ENST00000597423 FAM160B2Q86V87 743 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 ZSCAN16Q9H4T2 348 aaPredicted RBP17.62■□□□□ 0.41
TRIM28-209ENST00000597423 VAT1LQ9HCJ6 419 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 TMOD4Q9NZQ9 345 aa17.62■□□□□ 0.41
TRIM28-209ENST00000597423 TMEM232C9JQI7 657 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 WDR46O15213 610 aaKnown RBP17.61■□□□□ 0.41
TRIM28-209ENST00000597423 PPFIA3O75145 1194 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 SCG2P13521 617 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 PPATQ06203 517 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 DLK2Q6UY11 383 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 KCTD1Q719H9 257 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 ERO1BQ86YB8 467 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 CCDC12Q8WUD4 166 aaPredicted RBP17.61■□□□□ 0.41
TRIM28-209ENST00000597423 UBA5Q9GZZ9 404 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 ZNF408Q9H9D4 720 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 SH3GLB2Q9NR46 395 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 FEM1BQ9UK73 627 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 MTMR6Q9Y217 621 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 CNTNAP5Q8WYK1 1306 aa17.61■□□□□ 0.41
TRIM28-209ENST00000597423 GREB1LQ9C091 1923 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-209ENST00000597423 hCG_1984214I3L0E3 225 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 STAT2P52630 851 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 GNL2Q13823 731 aaKnown RBP17.6■□□□□ 0.41
TRIM28-209ENST00000597423 ZYXQ15942 572 aaKnown RBP17.6■□□□□ 0.41
TRIM28-209ENST00000597423 MCTP1Q6DN14 999 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 BTNL9Q6UXG8 535 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 ADGRF4Q8IZF3 695 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 SPICE1Q8N0Z3 855 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 ZNF713Q8N859 430 aaPredicted RBP17.6■□□□□ 0.41
TRIM28-209ENST00000597423 SLC10A4Q96EP9 437 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 GBP4Q96PP9 640 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 BRMS1Q9HCU9 246 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 FZD1Q9UP38 647 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 AFG3L2Q9Y4W6 797 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 SNCAIPQ9Y6H5 919 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 SSC5DA1L4H1 1573 aa17.6■□□□□ 0.41
TRIM28-209ENST00000597423 PNMA6FA0A0J9YX94 578 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 TRAF5O00463 557 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 CXCL11O14625 94 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 DTNBO60941 627 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 CALML3P27482 149 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 MTMR2Q13614 643 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 LDLRAD1Q5T700 205 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 SYDE2Q5VT97 1194 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 GALNT17Q6IS24 598 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 CCDC148Q8NFR7 591 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 PIBF1Q8WXW3 757 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 GBA2Q9HCG7 927 aaPredicted RBP17.59■□□□□ 0.41
TRIM28-209ENST00000597423 UTRNP46939 3433 aa17.59■□□□□ 0.41
TRIM28-209ENST00000597423 POLR2AP24928 1970 aaKnown RBP17.59■□□□□ 0.41
TRIM28-209ENST00000597423 TRIM75PA6NK02 468 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 UBE2Q2LH0YL09 131 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 CYTH3O43739 400 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 CELF2O95319 508 aaKnown RBP17.58■□□□□ 0.4
TRIM28-209ENST00000597423 F13A1P00488 732 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 SLC16A2P36021 539 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 FOSBP53539 338 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 PKP1Q13835 747 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 PKN1Q16512 942 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 FAM83BQ5T0W9 1011 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 KRT40Q6A162 431 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 TTBK2Q6IQ55 1244 aa17.58■□□□□ 0.4
TRIM28-209ENST00000597423 CCDC84Q86UT8 332 aaPredicted RBP17.58■□□□□ 0.4
TRIM28-209ENST00000597423 TNPO1Q92973 898 aaKnown RBP17.58■□□□□ 0.4
TRIM28-209ENST00000597423 C12orf42Q96LP6 360 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms