RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 MCM5P33992 734 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 NEK4P51957 841 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 IRX3P78415 501 aaPredicted RBP11.33□□□□□ -0.6
DDX39A-220ENST00000593008 ST3GAL1Q11201 340 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 PABPC4Q13310 644 aaKnown RBP eCLIP11.33□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L2Q6R6M4 530 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 DHX32Q7L7V1 743 aaKnown RBP11.33□□□□□ -0.6
DDX39A-220ENST00000593008 CCDC144CPQ8IYA2 1237 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 IGDCC4Q8TDY8 1250 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 BRF1Q92994 677 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 TRIM47Q96LD4 638 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 TMEM47Q9BQJ4 181 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 UBAC1Q9BSL1 405 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 PDRG1Q9NUG6 133 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 MTMR4Q9NYA4 1195 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 PNMA3Q9UL41 463 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 CYP46A1Q9Y6A2 500 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 PTCH2Q9Y6C5 1203 aa11.33□□□□□ -0.6
DDX39A-220ENST00000593008 PPFIA3O75145 1194 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 MYCP01106 439 aaPredicted RBP11.32□□□□□ -0.6
DDX39A-220ENST00000593008 PCP11498 1178 aaKnown RBP11.32□□□□□ -0.6
DDX39A-220ENST00000593008 ARHGEF6Q15052 776 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 SPICE1Q8N0Z3 855 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 CCDC17Q96LX7 622 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 P2RX7Q99572 595 aaKnown RBP11.32□□□□□ -0.6
DDX39A-220ENST00000593008 TM6SF1Q9BZW5 370 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 CPVLQ9H3G5 476 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 CLIP2Q9UDT6 1046 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 ZSWIM8A7E2V4 1837 aa11.32□□□□□ -0.6
DDX39A-220ENST00000593008 PTPRFP10586 1907 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 MYH4Q9Y623 1939 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 RAD21O60216 631 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 GOLGA8HP0CJ92 632 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 TAL1P17542 331 aaPredicted RBP11.31□□□□□ -0.6
DDX39A-220ENST00000593008 PSMA5P28066 241 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 NOVP48745 357 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 FCGRTP55899 365 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 WTAPQ15007 396 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 RABEP1Q15276 862 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 SLC35G1Q2M3R5 365 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 IFIT1BQ5T764 474 aaKnown RBP11.31□□□□□ -0.6
DDX39A-220ENST00000593008 KIAA1683Q9H0B3 1180 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 ZNF287Q9HBT7 754 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 TCP11L1Q9NUJ3 509 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 TPCN1Q9ULQ1 816 aa11.31□□□□□ -0.6
DDX39A-220ENST00000593008 FRMPD2Q68DX3 1309 aaPredicted RBP11.31□□□□□ -0.6
DDX39A-220ENST00000593008 KLF18A0A0U1RQI7 1052 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 GOLGA8BA8MQT2 603 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 TTLL1O95922 423 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 NDUFB10O96000 172 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 VCAM1P19320 739 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 HOXA7P31268 230 aaPredicted RBP11.3□□□□□ -0.6
DDX39A-220ENST00000593008 USP14P54578 494 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 HERVK_113P62684 666 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 PRKCZQ05513 592 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 STK3Q13188 491 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 SLC9C1Q4G0N8 1177 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 MICU3Q86XE3 530 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 NECAB1Q8N987 351 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 SH3TC2Q8TF17 1288 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 RPAP3Q9H6T3 665 aaPredicted RBP11.3□□□□□ -0.6
DDX39A-220ENST00000593008 KANSL2Q9H9L4 492 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 NCOA5Q9HCD5 579 aaKnown RBP11.3□□□□□ -0.6
DDX39A-220ENST00000593008 TXNRD2Q9NNW7 524 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 TAOK2Q9UL54 1235 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 NAP1L2Q9ULW6 460 aaPredicted RBP11.3□□□□□ -0.6
DDX39A-220ENST00000593008 GABRQQ9UN88 632 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 LOC285556D6RIA3 1793 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 MYPNQ86TC9 1320 aa11.3□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L15C9J2P7 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L13C9JLJ4 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L11C9JVI0 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L18D6R9N7 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L22D6RA61 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L17D6RBQ6 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L19D6RCP7 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L20D6RJB6 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 TNPO2O14787 897 aaKnown RBP11.29□□□□□ -0.6
DDX39A-220ENST00000593008 TOP1P11387 765 aaKnown RBP11.29□□□□□ -0.6
DDX39A-220ENST00000593008 GCLCP48506 637 aaPredicted RBP11.29□□□□□ -0.6
DDX39A-220ENST00000593008 FGD1P98174 961 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 USP17L24Q0WX57 530 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 FAM110CQ1W6H9 321 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 TTBK2Q6IQ55 1244 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 POTEEQ6S8J3 1075 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 NFXL1Q6ZNB6 911 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 KCTD1Q719H9 257 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 IQCA1Q86XH1 822 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 ZNF654Q8IZM8 581 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 CMTR1Q8N1G2 835 aaKnown RBP11.29□□□□□ -0.6
DDX39A-220ENST00000593008 PNMA1Q8ND90 353 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 RAET1EQ8TD07 263 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 NUP133Q8WUM0 1156 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 TMEM87BQ96K49 555 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 C12orf42Q96LP6 360 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 PAGR1Q9BTK6 254 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 AGXT2Q9BYV1 514 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 ARHGEF10LQ9HCE6 1279 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 NYAP2Q9P242 653 aa11.29□□□□□ -0.6
DDX39A-220ENST00000593008 SRRDQ9UH36 339 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms