RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 RXRAP19793 462 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 RCAN1P53805 252 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 SPP2Q13103 211 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 CLEC17AQ6ZS10 378 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 TMEM179Q6ZVK1 233 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 ZNF654Q8IZM8 581 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 ZNF444Q8N0Y2 327 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-204ENST00000589604 NEDD1Q8NHV4 660 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 CCDC17Q96LX7 622 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 NAP1L2Q9ULW6 460 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-204ENST00000589604 PTPDC1A2A3K4 754 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 CCDC69A6NI79 296 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 ZBTB48P10074 688 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-204ENST00000589604 TROAPQ12815 778 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 NFKBIBQ15653 356 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 NFXL1Q6ZNB6 911 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 MICU3Q86XE3 530 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 ZNF280CQ8ND82 737 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 BRI3BPQ8WY22 251 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 CEP95Q96GE4 821 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 WDR18Q9BV38 432 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 SLC12A7Q9Y666 1083 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 LOC285556D6RIA3 1793 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 ERICH2A1L162 156 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 IGF2BP3O00425 579 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS4B-204ENST00000589604 STX6O43752 255 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 EEF2P13639 858 aaKnown RBP12.18□□□□□ -0.46
VPS4B-204ENST00000589604 METAP2P50579 478 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS4B-204ENST00000589604 IFIT1BQ5T764 474 aaKnown RBP12.18□□□□□ -0.46
VPS4B-204ENST00000589604 DGKHQ86XP1 1220 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 ZNF287Q9HBT7 754 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 CABP5Q9NP86 173 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 GINM1Q9NU53 330 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 MTMR6Q9Y217 621 aa12.18□□□□□ -0.46
VPS4B-204ENST00000589604 A0A0G2JLL6 359 aaPredicted RBP12.17□□□□□ -0.46
VPS4B-204ENST00000589604 GOLGA8AA7E2F4 631 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 PPFIA3O75145 1194 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 TSPY3P0CV98 308 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 TSPY8P0CW00 308 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 HMGCS2P54868 508 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 ICA1Q05084 483 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 NOGQ13253 232 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 MTMR2Q13614 643 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 ZYXQ15942 572 aaKnown RBP12.17□□□□□ -0.46
VPS4B-204ENST00000589604 GPAT2Q6NUI2 795 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 RASGRP2Q7LDG7 609 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 PRRT2Q7Z6L0 340 aaPredicted RBP12.17□□□□□ -0.46
VPS4B-204ENST00000589604 CCDC144CPQ8IYA2 1237 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 FANCBQ8NB91 859 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 DDX11Q96FC9 970 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 EMILIN3Q9NT22 766 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 MTMR4Q9NYA4 1195 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 MYH15Q9Y2K3 1946 aa12.17□□□□□ -0.46
VPS4B-204ENST00000589604 TESPA1A2RU30 521 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CXCL11O14625 94 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 BACE1P56817 501 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 HMGN5P82970 282 aaKnown RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 FUT2Q10981 343 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 TREML2Q5T2D2 321 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 LARP1BQ659C4 914 aaKnown RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 NBPF11Q86T75 865 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CHMP4CQ96CF2 233 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 KANSL2Q9H9L4 492 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CCL15-CCL14A0A0B4J2E2 113 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 DHX16O60231 1041 aaKnown RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 ZSCAN22P10073 491 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 IFNAR1P17181 557 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 TM4SF4P48230 202 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 GTF2A2P52657 109 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 ATP2B2Q01814 1243 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 SNAPC2Q13487 334 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CCL15Q16663 113 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 RTN1Q16799 776 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CCDC178Q5BJE1 867 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 SH3D19Q5HYK7 790 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 FOXD4L5Q5VV16 416 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 FAM43AQ8N2R8 423 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 FOXD4L4Q8WXT5 416 aaPredicted RBP12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CHAMP1Q96JM3 812 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 TMEM47Q9BQJ4 181 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 KIAA1683Q9H0B3 1180 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 CLIP2Q9UDT6 1046 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 TMX2Q9Y320 296 aa12.16□□□□□ -0.46
VPS4B-204ENST00000589604 BTBD19C9JJ37 291 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 USP17L10C9JJH3 530 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 DDAH1O94760 285 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 BAG4O95429 457 aaKnown RBP12.15□□□□□ -0.46
VPS4B-204ENST00000589604 MAP2K2P36507 400 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 SYNE3Q6ZMZ3 975 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 CATIPQ7Z7H3 387 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 LRRC47Q8N1G4 583 aaKnown RBP12.15□□□□□ -0.46
VPS4B-204ENST00000589604 KCNV2Q8TDN2 545 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 R3HDMLQ9H3Y0 253 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 SLC24A3Q9HC58 644 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 NYAP2Q9P242 653 aa12.15□□□□□ -0.46
VPS4B-204ENST00000589604 ORC3Q9UBD5 711 aaPredicted RBP12.15□□□□□ -0.46
VPS4B-204ENST00000589604 MANSC4A6NHS7 340 aaPredicted RBP12.14□□□□□ -0.47
VPS4B-204ENST00000589604 CETPP11597 493 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 PDCP20941 246 aa12.14□□□□□ -0.47
VPS4B-204ENST00000589604 MCM4P33991 863 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms