RNA–Protein interactions for RNA: ENST00000583363.5

CDK5RAP3-228, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 558 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-228ENST00000583363 SLC4A3P48751 1232 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 KLRC3Q07444 240 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SPP2Q13103 211 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 GRM4Q14833 912 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SLFN13Q68D06 897 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CCDC83Q8IWF9 413 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ZNF280CQ8ND82 737 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CHMP4CQ96CF2 233 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 IPO9Q96P70 1041 aaKnown RBP19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SH2D4AQ9H788 454 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ELP3Q9H9T3 547 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ATAD5Q96QE3 1844 aa19.07■□□□□ 0.64
CDK5RAP3-228ENST00000583363 NID2Q14112 1375 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 DOCK1Q14185 1865 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 PALM3A6NDB9 673 aaPredicted RBP19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 PDHBP11177 359 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 PPATQ06203 517 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 RTN1Q16799 776 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ERO1BQ86YB8 467 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CCDC144CPQ8IYA2 1237 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SLC10A4Q96EP9 437 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 KIAA1683Q9H0B3 1180 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 NCOA5Q9HCD5 579 aaKnown RBP19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 MYH4Q9Y623 1939 aa19.06■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CCDC196A0A1B0GTZ2 297 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 USP17L10C9JJH3 530 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 NDUFB10O96000 172 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 BACE1P56817 501 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 KIAA1755Q5JYT7 1200 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CTCFLQ8NI51 663 aaPredicted RBP19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 DCAF4Q8WV16 495 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 INTS4Q96HW7 963 aaKnown RBP19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 VCPKMTQ9H867 229 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 GOPCQ9HD26 462 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 RBM28Q9NW13 759 aaKnown RBP19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 MAD2L2Q9UI95 211 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 MTMR7Q9Y216 660 aa19.05■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SPDYE5A6NIY4 337 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 C19orf81C9J6K1 198 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 DHX16O60231 1041 aaKnown RBP19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 PARP1P09874 1014 aaKnown RBP19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 KIF5BP33176 963 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 NTRK3Q16288 839 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 USP17L2Q6R6M4 530 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 STAG2Q8N3U4 1231 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CNKSR2Q8WXI2 1034 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 GMCL1Q96IK5 515 aa19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 LLPHQ9BRT6 129 aaKnown RBP19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.04■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CTDNEP1O95476 244 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 TBC1D8O95759 1140 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 GNAQP50148 359 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 USP14P54578 494 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ZNF543Q08ER8 600 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 FEZ1Q99689 392 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 EMILIN3Q9NT22 766 aa19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 DAXXQ9UER7 740 aaPredicted RBP19.03■□□□□ 0.64
CDK5RAP3-228ENST00000583363 TRIM75PA6NK02 468 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CXCL11O14625 94 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 RAD21O60216 631 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 GOLGA8HP0CJ92 632 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SLC1A4P43007 532 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 PPIL2Q13356 520 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 MTMR2Q13614 643 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ASPRV1Q53RT3 343 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SH3D19Q5HYK7 790 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 TMTC3Q6ZXV5 915 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 RASGRP2Q7LDG7 609 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 SRBD1Q8N5C6 995 aaKnown RBP19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ZNF296Q8WUU4 475 aaPredicted RBP19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 OPTNQ96CV9 577 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 LZTS2Q9BRK4 669 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 OTOFQ9HC10 1997 aa19.02■□□□□ 0.64
CDK5RAP3-228ENST00000583363 CPLX1O14810 134 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 IRF6O14896 467 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 PLEKHA8P1O95397 391 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 BMP3P12645 472 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 IFNAR1P17181 557 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 SMARCA1P28370 1054 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 FUT2Q10981 343 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 ZYXQ15942 572 aaKnown RBP19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 GPATCH4Q5T3I0 446 aaKnown RBP19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 CPLX2Q6PUV4 134 aaKnown RBP19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 SPICE1Q8N0Z3 855 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 SPRYD3Q8NCJ5 442 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 NSUN7Q8NE18 718 aaKnown RBP19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 SMARCC2Q8TAQ2 1214 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 LPAR1Q92633 364 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 OTUD5Q96G74 571 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 C12orf42Q96LP6 360 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 KCNH4Q9UQ05 1017 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 PHIPQ8WWQ0 1821 aa19.01■□□□□ 0.63
CDK5RAP3-228ENST00000583363 FRMPD2Q68DX3 1309 aaPredicted RBP19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 KLRF2D3W0D1 207 aa19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 HSP90AA1P07900 732 aaKnown RBP19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 GJA5P36382 358 aa19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 TM4SF4P48230 202 aa19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 MKRN3Q13064 507 aaKnown RBP19■□□□□ 0.63
CDK5RAP3-228ENST00000583363 TTBK2Q6IQ55 1244 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms