RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 BACE1P56817 501 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 PPATQ06203 517 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 SLC35G1Q2M3R5 365 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 KIAA1755Q5JYT7 1200 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 ERO1BQ86YB8 467 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 SMC1BQ8NDV3 1235 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 RBM46Q8TBY0 533 aaKnown RBP18.76■□□□□ 0.59
SS18-211ENST00000578954 LPAR1Q92633 364 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 ZHX2Q9Y6X8 837 aa18.76■□□□□ 0.59
SS18-211ENST00000578954 C19orf81C9J6K1 198 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 KLRF2D3W0D1 207 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 UBE2Q2LH0YL09 131 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 PLA2G6O60733 806 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 SLC1A4P43007 532 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 SPP2Q13103 211 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 SH3D19Q5HYK7 790 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 CST9Q5W186 159 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 BTNL9Q6UXG8 535 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 RGS22Q8NE09 1264 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 CLMNQ96JQ2 1002 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 FEZ1Q99689 392 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 RIOX1Q9H6W3 641 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 ZNF408Q9H9D4 720 aa18.75■□□□□ 0.59
SS18-211ENST00000578954 CIZ1Q9ULV3 898 aaPredicted RBP18.75■□□□□ 0.59
SS18-211ENST00000578954 PTPRFP10586 1907 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 WDR46O15213 610 aaKnown RBP18.74■□□□□ 0.59
SS18-211ENST00000578954 PRPF3O43395 683 aaKnown RBP18.74■□□□□ 0.59
SS18-211ENST00000578954 CYTH3O43739 400 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 GOLGA8HP0CJ92 632 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 BMP3P12645 472 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 PPIL2Q13356 520 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 MTMR2Q13614 643 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 C2orf69Q8N8R5 385 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 PHKBQ93100 1093 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 ELP3Q9H9T3 547 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 RBM27Q9P2N5 1060 aaKnown RBP18.74■□□□□ 0.59
SS18-211ENST00000578954 ORC3Q9UBD5 711 aaPredicted RBP18.74■□□□□ 0.59
SS18-211ENST00000578954 KCNH4Q9UQ05 1017 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 MTMR7Q9Y216 660 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 KIF3AQ9Y496 699 aa18.74■□□□□ 0.59
SS18-211ENST00000578954 FRMPD2Q68DX3 1309 aaPredicted RBP18.74■□□□□ 0.59
SS18-211ENST00000578954 TOMM70O94826 608 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 DEXIO95424 95 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 YY1P25490 414 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 SSRP1Q08945 709 aaKnown RBP18.73■□□□□ 0.59
SS18-211ENST00000578954 CCDC96Q2M329 555 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 TRIM22Q8IYM9 498 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 CMTR1Q8N1G2 835 aaKnown RBP18.73■□□□□ 0.59
SS18-211ENST00000578954 DDX11Q96FC9 970 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 EMILIN3Q9NT22 766 aa18.73■□□□□ 0.59
SS18-211ENST00000578954 CXCL11O14625 94 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 PDIA4P13667 645 aaKnown RBP18.72■□□□□ 0.59
SS18-211ENST00000578954 KCTD1Q719H9 257 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 CNKSR2Q8WXI2 1034 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 MTMR8Q96EF0 704 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 SLC26A6Q9BXS9 759 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 LOC285556D6RIA3 1793 aa18.72■□□□□ 0.59
SS18-211ENST00000578954 TRIM75PA6NK02 468 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 DTNBO60941 627 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 PDCP20941 246 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 ZYXQ15942 572 aaKnown RBP18.71■□□□□ 0.59
SS18-211ENST00000578954 PKN1Q16512 942 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 FAM83BQ5T0W9 1011 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 TTBK2Q6IQ55 1244 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 SPICE1Q8N0Z3 855 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 FAM184AQ8NB25 1140 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 ZNF784Q8NCA9 323 aaPredicted RBP18.71■□□□□ 0.59
SS18-211ENST00000578954 WASF1Q92558 559 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 NUP88Q99567 741 aaPredicted RBP18.71■□□□□ 0.59
SS18-211ENST00000578954 GPCPD1Q9NPB8 672 aa18.71■□□□□ 0.59
SS18-211ENST00000578954 MYH6P13533 1939 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 A0A0G2JLL6 359 aaPredicted RBP18.7■□□□□ 0.58
SS18-211ENST00000578954 IRF6O14896 467 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 RAD21O60216 631 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 VCAM1P19320 739 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 SYT1P21579 422 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 FSTL1Q12841 308 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 PRRT2Q7Z6L0 340 aaPredicted RBP18.7■□□□□ 0.58
SS18-211ENST00000578954 FAM160B2Q86V87 743 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 CCDC82Q8N4S0 544 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 OPTNQ96CV9 577 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 OTUD5Q96G74 571 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 UBA5Q9GZZ9 404 aa18.7■□□□□ 0.58
SS18-211ENST00000578954 BAZ2BQ9UIF8 2168 aaKnown RBP18.7■□□□□ 0.58
SS18-211ENST00000578954 V9GY48 417 aaPredicted RBP18.7■□□□□ 0.58
SS18-211ENST00000578954 TMEM232C9JQI7 657 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 PPFIA3O75145 1194 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 GJA5P36382 358 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 STAT2P52630 851 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 HMGCS2P54868 508 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 AKAP17AQ02040 695 aaKnown RBP18.69■□□□□ 0.58
SS18-211ENST00000578954 PFKFB3Q16875 520 aaPredicted RBP18.69■□□□□ 0.58
SS18-211ENST00000578954 SYDE2Q5VT97 1194 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 ADGRF4Q8IZF3 695 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 FAM177A1Q8N128 213 aaPredicted RBP18.69■□□□□ 0.58
SS18-211ENST00000578954 SLC10A4Q96EP9 437 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 CPVLQ9H3G5 476 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 JMJD4Q9H9V9 463 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 CHMP5Q9NZZ3 219 aa18.69■□□□□ 0.58
SS18-211ENST00000578954 FEM1BQ9UK73 627 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms