RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	CACNB1	Q02641	598 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	CC2D1A	Q6P1N0	951 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	KRT26	Q7Z3Y9	468 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	ENOX1	Q8TC92	643 aa	Known RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	TRIM47	Q96LD4	638 aa		16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001	RNF41	Q9H4P4	317 aa	Predicted RBP	16.74	■□□□□ 0.27
PRPF8-216	ENST00000577001		B4DLN1	442 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	TROAP	Q12815	778 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	TTC19	Q6DKK2	380 aa	Predicted RBP	16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	ARFGAP3	Q9NP61	516 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	EHD2	Q9NZN4	543 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	ALS2	Q96Q42	1657 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	TAF1	P21675	1872 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	PICALM	Q13492	652 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	USP17L2	Q6R6M4	530 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	BRMS1	Q9HCU9	246 aa		16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	SIPA1L3	O60292	1781 aa	Predicted RBP	16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	FRMPD2	Q68DX3	1309 aa	Predicted RBP	16.73	■□□□□ 0.27
PRPF8-216	ENST00000577001	FCER1A	P12319	257 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	IDE	P14735	1019 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	ARID5A	Q03989	594 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	LRRC41	Q15345	812 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	PROCA1	Q8NCQ7	364 aa	Predicted RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	RIOK1	Q9BRS2	568 aa	Known RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	ABCB6	Q9NP58	842 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	AGPAT5	Q9NUQ2	364 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	KCNJ18	B7U540	433 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	KCNJ12	Q14500	433 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	LONRF2	Q1L5Z9	754 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	SPATA1	Q5VX52	437 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	NBPF5P	Q86XG9	351 aa	Predicted RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	CCDC155	Q8N6L0	562 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	GNL3L	Q9NVN8	582 aa	Known RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	CDHR2	Q9BYE9	1310 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	NTSR2	O95665	410 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	TRMT1L	Q7Z2T5	733 aa	Known RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	KIFC2	Q96AC6	838 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	ZHX3	Q9H4I2	956 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	KAT14	Q9H8E8	782 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	BIN2	Q9UBW5	565 aa	Predicted RBP	16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	CEP131	Q9UPN4	1083 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	MRFAP1	Q9Y605	127 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	LMTK3	Q96Q04	1460 aa		16.72	■□□□□ 0.27
PRPF8-216	ENST00000577001	CCDC194	A0A1B0GVG4	234 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	PLEK	P08567	350 aa	Predicted RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	TEC	P42680	631 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	DCP1A	Q9NPI6	582 aa	Predicted RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	DCC	P43146	1447 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	STX10	O60499	249 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	SARS	P49591	514 aa	Known RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	APBA1	Q02410	837 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	FOXR1	Q6PIV2	292 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	PHF20	Q9BVI0	1012 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	SLC39A2	Q9NP94	309 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	TMEM260	Q9NX78	707 aa		16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	ADD3	Q9UEY8	706 aa	Known RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	XIRP1	Q702N8	1843 aa	Known RBP	16.71	■□□□□ 0.27
PRPF8-216	ENST00000577001	STRC	Q7RTU9	1775 aa		16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	UBA7	P41226	1012 aa		16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	VSNL1	P62760	191 aa		16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	MAP3K9	P80192	1104 aa		16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	TBX2	Q13207	712 aa	Predicted RBP	16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	ZNF219	Q9P2Y4	722 aa	Predicted RBP	16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	DACH1	Q9UI36	760 aa		16.71	■□□□□ 0.26
PRPF8-216	ENST00000577001	TTC26	A0AVF1	554 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	COPB1	P53618	953 aa	Known RBP	16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	FBXL16	Q8N461	479 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	LRRC15	Q8TF66	581 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	MFAP3L	O75121	409 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	SCG2	P13521	617 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	TAL1	P17542	331 aa	Predicted RBP	16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	TXK	P42681	527 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	NAP1L1	P55209	391 aa	Known RBP	16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	GOLGA1	Q92805	767 aa		16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	FAM207A	Q9NSI2	230 aa	Predicted RBP	16.7	■□□□□ 0.26
PRPF8-216	ENST00000577001	GNPAT	O15228	680 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	NFIX	Q14938	502 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	NPY5R	Q15761	445 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	TMTC3	Q6ZXV5	915 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	PNMA1	Q8ND90	353 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	CAGE1	Q8TC20	777 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	PHLPP2	Q6ZVD8	1323 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	ABCC6	O95255	1503 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	MYH2	Q9UKX2	1941 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001		A0A1B0GTH6	734 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	EFCAB8	A8MWE9	144 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	CCNT1	O60563	726 aa	Known RBP	16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	RPN1	P04843	607 aa	Known RBP	16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	TPM1	P09493	284 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	PAK1	Q13153	545 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	IQUB	Q8NA54	791 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	RIMBP2	O15034	1052 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	KIF20A	O95235	890 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	TSPY3	P0CV98	308 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	TSPY8	P0CW00	308 aa		16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	HIBADH	P31937	336 aa	Known RBP	16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	APTX	Q7Z2E3	356 aa	Known RBP	16.69	■□□□□ 0.26
PRPF8-216	ENST00000577001	TMC4	Q7Z404	712 aa		16.69	■□□□□ 0.26

Retrieved 100 of 20,778 RNA–protein pairs in 52 ms