RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 LIN37Q96GY3 246 aaPredicted RBP5.28□□□□□ -1.56
NUP88-209ENST00000574855 SPATA32Q96LK8 384 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 SLC9A7Q96T83 725 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 SLC38A3Q99624 504 aa5.28□□□□□ -1.56
NUP88-209ENST00000574855 SHROOM4Q9ULL8 1493 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 SSU72P8A0A1W2PR75 194 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 FITM1A5D6W6 292 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 HPXP02790 462 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 C8AP07357 584 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 ZGLP1P0C6A0 271 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 PCBP3P57721 371 aaKnown RBP5.27□□□□□ -1.57
NUP88-209ENST00000574855 ERVFC1P60507 584 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 DUSP4Q13115 394 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 COL9A2Q14055 689 aaPredicted RBP5.27□□□□□ -1.57
NUP88-209ENST00000574855 PKN1Q16512 942 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 ZNF648Q5T619 568 aaPredicted RBP5.27□□□□□ -1.57
NUP88-209ENST00000574855 RNF111Q6ZNA4 994 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 TMEM192Q8IY95 271 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 FAM84AQ96KN4 292 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 SLC6A18Q96N87 628 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 TM9SF2Q99805 663 aa5.27□□□□□ -1.57
NUP88-209ENST00000574855 MKRN2Q9H000 416 aaKnown RBP5.27□□□□□ -1.57
NUP88-209ENST00000574855 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.27□□□□□ -1.57
NUP88-209ENST00000574855 SIGLEC6O43699 453 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 IGSF3O75054 1194 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 RPL10P27635 214 aaKnown RBP5.26□□□□□ -1.57
NUP88-209ENST00000574855 TEKQ02763 1124 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 CHRNEQ04844 493 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 PAK2Q13177 524 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 TMC3Q7Z5M5 1100 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 METTL16Q86W50 562 aaKnown RBP5.26□□□□□ -1.57
NUP88-209ENST00000574855 LILRA2Q8N149 483 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 USHBP1Q8N6Y0 703 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 RBBP8NLQ8NC74 664 aaPredicted RBP5.26□□□□□ -1.57
NUP88-209ENST00000574855 RGS22Q8NE09 1264 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 TCTN2Q96GX1 697 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 ZNF512BQ96KM6 892 aaPredicted RBP5.26□□□□□ -1.57
NUP88-209ENST00000574855 CRBNQ96SW2 442 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 HDAC8Q9BY41 377 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 PRDM14Q9GZV8 571 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 SUCOQ9UBS9 1254 aaKnown RBP5.26□□□□□ -1.57
NUP88-209ENST00000574855 FBXL21Q9UKT6 434 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 PPT2Q9UMR5 302 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 PCDHB12Q9Y5F1 795 aa5.26□□□□□ -1.57
NUP88-209ENST00000574855 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 PRAMEF1O95521 474 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 ACRP10323 421 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 HDLBPQ00341 1268 aaKnown RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 SNW1Q13573 536 aaKnown RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 AUHQ13825 339 aaKnown RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 NR0B2Q15466 257 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 PRR23BQ6ZRT6 265 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 NT5DC4Q86YG4 428 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 TAB3Q8N5C8 712 aaPredicted RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 LINC00116Q8NCU8 138 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 CHST7Q9NS84 486 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 KIAA1522Q9P206 1035 aaPredicted RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 ZMYM5Q9UJ78 669 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 TCFL5Q9UL49 500 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.25□□□□□ -1.57
NUP88-209ENST00000574855 ZNF281Q9Y2X9 895 aa5.25□□□□□ -1.57
NUP88-209ENST00000574855 FAM86C2PA6NEL3 165 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 TRHRP34981 398 aaPredicted RBP5.24□□□□□ -1.57
NUP88-209ENST00000574855 MESP2Q0VG99 397 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 C9orf131Q5VYM1 1079 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 WAPLQ7Z5K2 1190 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 CCDC144CPQ8IYA2 1237 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 ANKS4BQ8N8V4 417 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 BHLHE22Q8NFJ8 381 aaPredicted RBP5.24□□□□□ -1.57
NUP88-209ENST00000574855 LINC01599Q8WXQ3 324 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 FOXP3Q9BZS1 431 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 C19orf44Q9H6X5 657 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 GINM1Q9NU53 330 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 EFR3BQ9Y2G0 817 aa5.24□□□□□ -1.57
NUP88-209ENST00000574855 UNCXA6NJT0 531 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 SYPP08247 313 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 GUCY2CP25092 1073 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 SOX9P48436 509 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 PMS1P54277 932 aaKnown RBP5.23□□□□□ -1.57
NUP88-209ENST00000574855 SNX17Q15036 470 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 BBS9Q3SYG4 887 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 RASGRP4Q8TDF6 673 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 SMARCC1Q92922 1105 aaPredicted RBP5.23□□□□□ -1.57
NUP88-209ENST00000574855 GPRASP2Q96D09 838 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 DIRC2Q96SL1 478 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 RNF32Q9H0A6 362 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 SP110Q9HB58 689 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 CWC22Q9HCG8 908 aaKnown RBP5.23□□□□□ -1.57
NUP88-209ENST00000574855 PRR13Q9NZ81 148 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 EBF1Q9UH73 591 aa5.23□□□□□ -1.57
NUP88-209ENST00000574855 MEIS1O00470 390 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 FKTNO75072 461 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 ENDOUP21128 410 aaKnown RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 KIR2DL1P43626 348 aaPredicted RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 KIR2DL2P43627 348 aaPredicted RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 EIF6P56537 245 aaKnown RBP5.22□□□□□ -1.57
NUP88-209ENST00000574855 SLC14A2Q15849 920 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 ZNF124Q15973 351 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 ANKRD39Q53RE8 183 aa5.22□□□□□ -1.57
NUP88-209ENST00000574855 UNC5AQ6ZN44 842 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms