RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 RBM28Q9NW13 759 aaKnown RBP19.29■□□□□ 0.68
VPS53-215ENST00000573028 PP2D1A8MPX8 630 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 STAT6P42226 847 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 VSNL1P62760 191 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 IL17AQ16552 155 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 CYP26C1Q6V0L0 522 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 NOA1Q8NC60 698 aaKnown RBP19.28■□□□□ 0.68
VPS53-215ENST00000573028 UBXN6Q9BZV1 441 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 MYH3P11055 1940 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 ERLIN1O75477 346 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 RCAN1P53805 252 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 EIF5P55010 431 aaKnown RBP19.28■□□□□ 0.68
VPS53-215ENST00000573028 PPP2R5BQ15173 497 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 TCP11X2Q5H9J9 407 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 CTR9Q6PD62 1173 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 AK7Q96M32 723 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 CCDC87Q9NVE4 849 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 MYH2Q9UKX2 1941 aa19.28■□□□□ 0.68
VPS53-215ENST00000573028 BCL9O00512 1426 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 PRCPP42785 496 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 TSPY2A6NKD2 308 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 RPN1P04843 607 aaKnown RBP19.27■□□□□ 0.68
VPS53-215ENST00000573028 SCG2P13521 617 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 GTF2E1P29083 439 aaPredicted RBP19.27■□□□□ 0.68
VPS53-215ENST00000573028 CAVIN4Q5BKX8 364 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 BEND6Q5SZJ8 279 aaPredicted RBP19.27■□□□□ 0.68
VPS53-215ENST00000573028 MTA3Q9BTC8 594 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 HDAC6Q9UBN7 1215 aa19.27■□□□□ 0.68
VPS53-215ENST00000573028 ZSCAN26Q16670 478 aa19.27■□□□□ 0.67
VPS53-215ENST00000573028 HDXQ7Z353 690 aa19.27■□□□□ 0.67
VPS53-215ENST00000573028 CNTNAP5Q8WYK1 1306 aa19.27■□□□□ 0.67
VPS53-215ENST00000573028 GTPBP6O43824 516 aaPredicted RBP19.26■□□□□ 0.67
VPS53-215ENST00000573028 E2F4Q16254 413 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 PDXDC2PQ6P474 469 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 CAPZA3Q96KX2 299 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 RWDD2AQ9UIY3 292 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 ANKRD18AQ8IVF6 992 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 TNFRSF25Q93038 417 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 CCDC51Q96ER9 411 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 GDAP1L1Q96MZ0 367 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 LIMA1Q9UHB6 759 aaKnown RBP19.26■□□□□ 0.67
VPS53-215ENST00000573028 ANAPC4Q9UJX5 808 aa19.26■□□□□ 0.67
VPS53-215ENST00000573028 MYH6P13533 1939 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 SEMA3EO15041 775 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 CALM1P0DP23 149 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 CALM2P0DP24 149 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 CALM3P0DP25 149 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 INTS5Q6P9B9 1019 aaKnown RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 C3orf67Q6ZVT6 689 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 GPIHBP1Q8IV16 184 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 PCMTD1Q96MG8 357 aaPredicted RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 HINFPQ9BQA5 517 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 TFCP2L1Q9NZI6 479 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 EPN1Q9Y6I3 576 aaPredicted RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 SLIT2O94813 1529 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 TTC26A0AVF1 554 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 ARHGAP25P42331 645 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 SPAG1Q07617 926 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 TSR1Q2NL82 804 aaKnown RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 MYO6Q9UM54 1294 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 MYH8P13535 1937 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 NUP98P52948 1817 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 SRGAP2O75044 1071 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 PARP1P09874 1014 aaKnown RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 RAD51AP2Q09MP3 1159 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 CT47A1Q5JQC4 288 aaPredicted RBP19.25■□□□□ 0.67
VPS53-215ENST00000573028 SMIM5Q71RC9 77 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 CCDC24Q8N4L8 307 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 ZNF384Q8TF68 577 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 TRIM47Q96LD4 638 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 FAN1Q9Y2M0 1017 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 SHANK3Q9BYB0 1731 aa19.25■□□□□ 0.67
VPS53-215ENST00000573028 KLRK1P26718 216 aa19.24■□□□□ 0.67
VPS53-215ENST00000573028 ZNF658Q5TYW1 1059 aaPredicted RBP19.24■□□□□ 0.67
VPS53-215ENST00000573028 NTSR2O95665 410 aa19.24■□□□□ 0.67
VPS53-215ENST00000573028 PMS1P54277 932 aaKnown RBP19.24■□□□□ 0.67
VPS53-215ENST00000573028 PODXL2Q9NZ53 605 aa19.24■□□□□ 0.67
VPS53-215ENST00000573028 MAP2K7O14733 419 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 CAMTA2O94983 1202 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 NDUFA10O95299 355 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 TNNT3P45378 269 aaPredicted RBP19.23■□□□□ 0.67
VPS53-215ENST00000573028 LUC7L2Q9Y383 392 aaKnown RBP19.23■□□□□ 0.67
VPS53-215ENST00000573028 BAZ2AQ9UIF9 1905 aaKnown RBP19.23■□□□□ 0.67
VPS53-215ENST00000573028 POTEB2H3BUK9 544 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 ZMYND10O75800 440 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 CAPN2P17655 700 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 HSP90B2PQ58FF3 399 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 ITIH6Q6UXX5 1313 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 FAM205AQ6ZU69 1335 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 EIF3JO75822 258 aaKnown RBP19.23■□□□□ 0.67
VPS53-215ENST00000573028 DDAH1O94760 285 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 KCNQ4P56696 695 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 PIP4K2BP78356 416 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 CASP8Q14790 479 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 SKIDA1Q1XH10 827 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 ERFEQ4G0M1 354 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 PARP10Q53GL7 1025 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 CCDC122Q5T0U0 273 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 KIAA1328Q86T90 577 aa19.23■□□□□ 0.67
VPS53-215ENST00000573028 RMND1Q9NWS8 449 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms