RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 CHP1Q99653 195 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 SENP2Q9HC62 589 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 FAM169AQ9Y6X4 670 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 GUCY1A2P33402 732 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 IKQ13123 557 aaPredicted RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 PDCLQ13371 301 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 CCDC93Q567U6 631 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 ILDR1Q86SU0 546 aaPredicted RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 UIMC1Q96RL1 719 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 SEC63Q9UGP8 760 aaKnown RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 TFR2Q9UP52 801 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 PEAK1Q9H792 1746 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 SNAP23O00161 211 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 PARP1P09874 1014 aaKnown RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 IFT88Q13099 833 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 IFT20Q8IY31 132 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 ARFGAP2Q8N6H7 521 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 RPGRIP1Q96KN7 1286 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 SELENOSQ9BQE4 189 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 GDAQ9Y2T3 454 aa12.73□□□□□ -0.37
CLN3-238ENST00000569430 SRPRBQ9Y5M8 271 aaKnown RBP12.73□□□□□ -0.37
CLN3-238ENST00000569430 TNKSO95271 1327 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 ANKRD26Q9UPS8 1709 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 BICDL2A1A5D9 508 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 ATP6V1AP38606 617 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 CEP85LQ5SZL2 805 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 MSL1Q68DK7 614 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 RPN1P04843 607 aaKnown RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 IFNAR1P17181 557 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 RAPGEF1Q13905 1077 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 DYMQ7RTS9 669 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 SELENOOQ9BVL4 669 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 FOXP1Q9H334 677 aaPredicted RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 ABHD10Q9NUJ1 306 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 USP31Q70CQ4 1352 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 RTL9Q8NET4 1388 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 FMNL1O95466 1100 aaPredicted RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 CALRP27797 417 aaKnown RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 GUCY2DQ02846 1103 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 BEND6Q5SZJ8 279 aaPredicted RBP12.72□□□□□ -0.37
CLN3-238ENST00000569430 SPATA5Q8NB90 893 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 IL17RAQ96F46 866 aa12.72□□□□□ -0.37
CLN3-238ENST00000569430 G3V3G9 751 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 GNAT2P19087 354 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 CALML3P27482 149 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 FAM47AQ5JRC9 791 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 DCAF8Q5TAQ9 597 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 MMS22LQ6ZRQ5 1243 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 DZIP1Q86YF9 867 aaKnown RBP12.71□□□□□ -0.37
CLN3-238ENST00000569430 CCDC43Q96MW1 224 aaKnown RBP12.71□□□□□ -0.37
CLN3-238ENST00000569430 TSGA10Q9BZW7 698 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 MYO1AQ9UBC5 1043 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 H7C1D1 291 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 TMEM266Q2M3C6 531 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 PNMA8AQ86V59 439 aaPredicted RBP12.71□□□□□ -0.37
CLN3-238ENST00000569430 FOXP4Q8IVH2 680 aaPredicted RBP12.71□□□□□ -0.37
CLN3-238ENST00000569430 UBN2Q6ZU65 1347 aa12.71□□□□□ -0.37
CLN3-238ENST00000569430 FRMD3A2A2Y4 597 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 TRIM49BA6NDI0 452 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 TRAF5O00463 557 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 ARHGAP25P42331 645 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 DNM2P50570 870 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 NAPAP54920 295 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 ANTXR2P58335 489 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 TRIM58Q8NG06 486 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 NOX5Q96PH1 765 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 TUBGCP2Q9BSJ2 902 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 GREM2Q9H772 168 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 GPR108Q9NPR9 543 aa12.71□□□□□ -0.38
CLN3-238ENST00000569430 ATP1A1P05023 1023 aaKnown RBP12.7□□□□□ -0.38
CLN3-238ENST00000569430 ADD2P35612 726 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 VPS36Q86VN1 386 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 RASGRP4Q8TDF6 673 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 MMS19Q96T76 1030 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 LRWD1Q9UFC0 647 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 NRKQ7Z2Y5 1582 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 FAM205CA6NFA0 338 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 CFAP221Q4G0U5 840 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 FBXW10Q5XX13 1052 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 DNAJC10Q8IXB1 793 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 SYNE4Q8N205 404 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 HPS5Q9UPZ3 1129 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 ZNF185O15231 689 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 GTPBP6O43824 516 aaPredicted RBP12.7□□□□□ -0.38
CLN3-238ENST00000569430 CEP104O60308 925 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 TNNC1P63316 161 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 PAK2Q13177 524 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 TCIRG1Q13488 830 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 NR1I3Q14994 352 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 NUP58Q9BVL2 599 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 PIH1D3Q9NQM4 214 aaKnown RBP12.7□□□□□ -0.38
CLN3-238ENST00000569430 BAIAP2L1Q9UHR4 511 aa12.7□□□□□ -0.38
CLN3-238ENST00000569430 RGPD8O14715 1765 aaPredicted RBP12.7□□□□□ -0.38
CLN3-238ENST00000569430 A0A0U1RQJ8 604 aa12.69□□□□□ -0.38
CLN3-238ENST00000569430 TTC26A0AVF1 554 aa12.69□□□□□ -0.38
CLN3-238ENST00000569430 MCAMP43121 646 aa12.69□□□□□ -0.38
CLN3-238ENST00000569430 CUL4BQ13620 913 aa12.69□□□□□ -0.38
CLN3-238ENST00000569430 E2F5Q15329 346 aa12.69□□□□□ -0.38
CLN3-238ENST00000569430 PUM3Q15397 648 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms