RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 KLRC3Q07444 240 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 TROAPQ12815 778 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 MTMR2Q13614 643 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 KIAA1755Q5JYT7 1200 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 SPRYD7Q5W111 196 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 RGMBQ6NW40 437 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 APOA5Q6Q788 366 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 CATIPQ7Z7H3 387 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 ZNF654Q8IZM8 581 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 WNK4Q96J92 1243 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 FEZ1Q99689 392 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 MYL10Q9BUA6 226 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 VCPKMTQ9H867 229 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 WDR70Q9NW82 654 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 ABT1Q9ULW3 272 aaKnown RBP9.89□□□□□ -0.83
SF3B3-212ENST00000568539 LIMCH1Q9UPQ0 1083 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 KCNH4Q9UQ05 1017 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 SLC12A7Q9Y666 1083 aa9.89□□□□□ -0.83
SF3B3-212ENST00000568539 DOCK1Q14185 1865 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 GOLGA8BA8MQT2 603 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 C19orf81C9J6K1 198 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 CXCL11O14625 94 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 DDAH1O94760 285 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 NDUFB10O96000 172 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 SNHG28P0DPA3 235 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 ZBTB48P10074 688 aaPredicted RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 PDHBP11177 359 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 PDIA3P30101 505 aaKnown RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 MCM2P49736 904 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 ZNF157P51786 506 aaPredicted RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 RCAN1P53805 252 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 USP14P54578 494 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 DGKZQ13574 1117 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 ZYXQ15942 572 aaKnown RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 SH3D19Q5HYK7 790 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 SLFN13Q68D06 897 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 USP17L2Q6R6M4 530 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 NOL8Q76FK4 1167 aaKnown RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 RASGRP2Q7LDG7 609 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 RASAL3Q86YV0 1011 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 SNX21Q969T3 373 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 ZNF274Q96GC6 653 aaPredicted RBP9.88□□□□□ -0.83
SF3B3-212ENST00000568539 GMCL1Q96IK5 515 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 C12orf42Q96LP6 360 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 GOPCQ9HD26 462 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 EMILIN3Q9NT22 766 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 HPS5Q9UPZ3 1129 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 OTOFQ9HC10 1997 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 NID2Q14112 1375 aa9.88□□□□□ -0.83
SF3B3-212ENST00000568539 A0A0G2JLL6 359 aaPredicted RBP9.87□□□□□ -0.83
SF3B3-212ENST00000568539 RASSF10A6NK89 507 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 FAM155AB1AL88 458 aaPredicted RBP9.87□□□□□ -0.83
SF3B3-212ENST00000568539 ZBTB43O43298 467 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 LARGE1O95461 756 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 SLC10A3P09131 477 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 CALM1P0DP23 149 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 CALM2P0DP24 149 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 CALM3P0DP25 149 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 RXRAP19793 462 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 HMGCS2P54868 508 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 GRM4Q14833 912 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 ME3Q16798 604 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 SYNE3Q6ZMZ3 975 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 PRRT2Q7Z6L0 340 aaPredicted RBP9.87□□□□□ -0.83
SF3B3-212ENST00000568539 MICU3Q86XE3 530 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 RAB11FIP4Q86YS3 637 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 SPICE1Q8N0Z3 855 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 FANCBQ8NB91 859 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 NUP133Q8WUM0 1156 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 LPAR1Q92633 364 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 CCDC102AQ96A19 550 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 MAP3K14Q99558 947 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 MTMR7Q9Y216 660 aa9.87□□□□□ -0.83
SF3B3-212ENST00000568539 GOLGA8AA7E2F4 631 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 WDR46O15213 610 aaKnown RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 RAD21O60216 631 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 PFKFB2O60825 505 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 VCAM1P19320 739 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 SLC1A4P43007 532 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 METAP2P50579 478 aaKnown RBP eCLIP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 GTF2A2P52657 109 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 ZNF543Q08ER8 600 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 MKRN3Q13064 507 aaKnown RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 STK3Q13188 491 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 SNAPC2Q13487 334 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 MOGSQ13724 837 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 MFSD10Q14728 455 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 CCDC144CPQ8IYA2 1237 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 PROCA1Q8NCQ7 364 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 DCAF4Q8WV16 495 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 CHMP4CQ96CF2 233 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 ABHD8Q96I13 439 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 TMX3Q96JJ7 454 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 ZSCAN31Q96LW9 406 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 NUP88Q99567 741 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 FAM217BQ9NTX9 383 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 TMOD4Q9NZQ9 345 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 MAD2L2Q9UI95 211 aa9.86□□□□□ -0.83
SF3B3-212ENST00000568539 NAP1L2Q9ULW6 460 aaPredicted RBP9.86□□□□□ -0.83
SF3B3-212ENST00000568539 POLR2AP24928 1970 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms