RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PLXNA1Q9UIW2 1896 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 PNMA6EA0A0J9YXQ4 647 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 AKR1A1P14550 325 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 CSF2RAP15509 400 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 TNNI3KQ59H18 835 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 KIAA1755Q5JYT7 1200 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 ZNF365Q70YC5 407 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 CERS3Q8IU89 383 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 MICALL1Q8N3F8 863 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 VTI1AQ96AJ9 217 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 TSEN34Q9BSV6 310 aaKnown RBP19.71■□□□□ 0.75
CLK3-223ENST00000568488 TBX21Q9UL17 535 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 FPGT-TNNI3KV9GXZ4 949 aa19.71■□□□□ 0.75
CLK3-223ENST00000568488 BDP1A6H8Y1 2624 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 ADAMTS4O75173 837 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 GNAI2P04899 355 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 ZNF865P0CJ78 1059 aaPredicted RBP19.7■□□□□ 0.74
CLK3-223ENST00000568488 OS9Q13438 667 aaPredicted RBP19.7■□□□□ 0.74
CLK3-223ENST00000568488 KCNA10Q16322 511 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 SPICE1Q8N0Z3 855 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 TMEM199Q8N511 208 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 PPP1R12CQ9BZL4 782 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 NKX2-4Q9H2Z4 354 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 CNPY2Q9Y2B0 182 aa19.7■□□□□ 0.74
CLK3-223ENST00000568488 MYO5AQ9Y4I1 1855 aaKnown RBP19.69■□□□□ 0.74
CLK3-223ENST00000568488 IGSF3O75054 1194 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 SLC25A27O95847 323 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 KCTD2Q14681 263 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 TMEM132BQ14DG7 1078 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 RAB30Q15771 203 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 SLC28A3Q9HAS3 691 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 GPR108Q9NPR9 543 aa19.69■□□□□ 0.74
CLK3-223ENST00000568488 TCF20Q9UGU0 1960 aaKnown RBP19.68■□□□□ 0.74
CLK3-223ENST00000568488 MOXD2PA6NHM9 499 aa19.68■□□□□ 0.74
CLK3-223ENST00000568488 RASIP1Q5U651 963 aa19.68■□□□□ 0.74
CLK3-223ENST00000568488 PSRC1Q6PGN9 363 aaPredicted RBP19.68■□□□□ 0.74
CLK3-223ENST00000568488 GLT1D1Q96MS3 346 aa19.68■□□□□ 0.74
CLK3-223ENST00000568488 BMP1P13497 986 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 TFF2Q03403 129 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 SKIV2LQ15477 1246 aaKnown RBP19.67■□□□□ 0.74
CLK3-223ENST00000568488 ZNF792Q3KQV3 632 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 ZNF512BQ96KM6 892 aaPredicted RBP19.67■□□□□ 0.74
CLK3-223ENST00000568488 CXXC1Q9P0U4 656 aaPredicted RBP19.67■□□□□ 0.74
CLK3-223ENST00000568488 FAM184BQ9ULE4 1060 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 HCN4Q9Y3Q4 1203 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 NCOR1O75376 2440 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 MROH7Q68CQ1 1323 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 SYNRGQ9UMZ2 1314 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 CHD9Q3L8U1 2897 aa19.67■□□□□ 0.74
CLK3-223ENST00000568488 ZNFX1Q9P2E3 1918 aaKnown RBP19.66■□□□□ 0.74
CLK3-223ENST00000568488 EVX2Q03828 476 aa19.66■□□□□ 0.74
CLK3-223ENST00000568488 KLHDC9Q8NEP7 349 aa19.66■□□□□ 0.74
CLK3-223ENST00000568488 ARHGEF10LQ9HCE6 1279 aa19.66■□□□□ 0.74
CLK3-223ENST00000568488 ZHX1Q9UKY1 873 aaPredicted RBP19.66■□□□□ 0.74
CLK3-223ENST00000568488 DIS3Q9Y2L1 958 aaKnown RBP19.66■□□□□ 0.74
CLK3-223ENST00000568488 MYADML2A6NDP7 307 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 IRX5P78411 483 aaPredicted RBP19.65■□□□□ 0.74
CLK3-223ENST00000568488 GABPAQ06546 454 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 AAK1Q2M2I8 961 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 TMEM179Q6ZVK1 233 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 LRFN3Q9BTN0 628 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 CCDC8Q9H0W5 538 aaPredicted RBP19.65■□□□□ 0.74
CLK3-223ENST00000568488 MCM9Q9NXL9 1143 aa19.65■□□□□ 0.74
CLK3-223ENST00000568488 YBX2Q9Y2T7 364 aaKnown RBP19.65■□□□□ 0.74
CLK3-223ENST00000568488 TLR3O15455 904 aaKnown RBP19.64■□□□□ 0.73
CLK3-223ENST00000568488 FGBP02675 491 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 C6orf222P0C671 652 aaPredicted RBP19.64■□□□□ 0.73
CLK3-223ENST00000568488 CYP2C18P33260 490 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 STAT3P40763 770 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 CDK7P50613 346 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 KCNQ1P51787 676 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 RIOX2Q8IUF8 465 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 CLEC10AQ8IUN9 316 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 MTIF3Q9H2K0 278 aaKnown RBP19.64■□□□□ 0.73
CLK3-223ENST00000568488 EPHX3Q9H6B9 360 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 VCPKMTQ9H867 229 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 IL23AQ9NPF7 189 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 ELP1O95163 1332 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 A0A0G2JMZ2 1700 aa19.64■□□□□ 0.73
CLK3-223ENST00000568488 ROBO3Q96MS0 1386 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 SURF6O75683 361 aaKnown RBP19.63■□□□□ 0.73
CLK3-223ENST00000568488 ASGR1P07306 291 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 CCSAPQ6IQ19 270 aaPredicted RBP19.63■□□□□ 0.73
CLK3-223ENST00000568488 HERVK_113Q902F9 699 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 ANTXR1Q9H6X2 564 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 SH2D4AQ9H788 454 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 FBXO28Q9NVF7 368 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 TLR7Q9NYK1 1049 aaKnown RBP19.63■□□□□ 0.73
CLK3-223ENST00000568488 DBNLQ9UJU6 430 aaKnown RBP19.63■□□□□ 0.73
CLK3-223ENST00000568488 TMX2Q9Y320 296 aa19.63■□□□□ 0.73
CLK3-223ENST00000568488 MAGEB6P1A0A0J9YX57 407 aa19.62■□□□□ 0.73
CLK3-223ENST00000568488 A0A0U1RQG5 324 aaPredicted RBP19.62■□□□□ 0.73
CLK3-223ENST00000568488 ARVCFO00192 962 aa19.62■□□□□ 0.73
CLK3-223ENST00000568488 WDR46O15213 610 aaKnown RBP19.62■□□□□ 0.73
CLK3-223ENST00000568488 DUSP11O75319 330 aaKnown RBP19.62■□□□□ 0.73
CLK3-223ENST00000568488 CT47B1P0C2W7 299 aaPredicted RBP19.62■□□□□ 0.73
CLK3-223ENST00000568488 RABGGTBP53611 331 aa19.62■□□□□ 0.73
CLK3-223ENST00000568488 ICA1Q05084 483 aa19.62■□□□□ 0.73
CLK3-223ENST00000568488 OTOP2Q7RTS6 562 aa19.62■□□□□ 0.73
CLK3-223ENST00000568488 SIAH1Q8IUQ4 282 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms