RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	UBE3C	Q15386	1083 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	CFAP100	Q494V2	611 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	DALRD3	Q5D0E6	543 aa	Known RBP	12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	LINC00301	Q8NCQ3	95 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	ANKRD20A12P	Q8NF67	263 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	WDR66	Q8TBY9	1149 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	CCDC12	Q8WUD4	166 aa	Predicted RBP	12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	DBNDD1	Q9H9R9	158 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	SNED1	Q8TER0	1413 aa		12.52	□□□□□ -0.4
TCF4-222	ENST00000564228	FER1L6	Q2WGJ9	1857 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	TCRBV5S4A2T	A0A5A2	114 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	MAP2K2	P36507	400 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	AOC3	Q16853	763 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	BANK1	Q8NDB2	785 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	DPF2	Q92785	391 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	PNKP	Q96T60	521 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	ABCB6	Q9NP58	842 aa		12.52	□□□□□ -0.41
TCF4-222	ENST00000564228	GPAA1	O43292	621 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	N4BP1	O75113	896 aa	Known RBP	12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	WDHD1	O75717	1129 aa	Predicted RBP	12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	CTDNEP1	O95476	244 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	CYP7A1	P22680	504 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	GTF2I	P78347	998 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	STK38	Q15208	465 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	RTKN2	Q8IZC4	609 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	FAM177A1	Q8N128	213 aa	Predicted RBP	12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	NLGN2	Q8NFZ4	835 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	AFAP1L1	Q8TED9	768 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	AIDA	Q96BJ3	306 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	RTFDC1	Q9BY42	306 aa	Predicted RBP	12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	AGXT2	Q9BYV1	514 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	FAM204A	Q9H8W3	233 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	A1CF	Q9NQ94	594 aa	Known RBP	12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	BCS1L	Q9Y276	419 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	ARFGEF1	Q9Y6D6	1849 aa		12.51	□□□□□ -0.41
TCF4-222	ENST00000564228	SHOX2	O60902	331 aa	Predicted RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	ERLIN2	O94905	339 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	ZNF202	O95125	648 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	CCDC175	P0C221	793 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	CMA1	P23946	247 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	MECOM	Q03112	1051 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	TRDN	Q13061	729 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	SF3A1	Q15459	793 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	WHAMMP3	Q1A5X7	153 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	SPTY2D1	Q68D10	685 aa	Predicted RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	WDR93	Q6P2C0	686 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	TOGARAM2	Q6ZUX3	1019 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	DZIP1	Q86YF9	867 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	POTED	Q86YR6	584 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	TC2N	Q8N9U0	490 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	MIGA1	Q8NAN2	632 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	SUPT20H	Q8NEM7	779 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	PPIP5K2	O43314	1243 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	LDHB	P07195	334 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	HSPD1	P10809	573 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	MFSD14B	Q5SR56	506 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	BRAP	Q7Z569	592 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	ADGRA1	Q86SQ6	560 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	MICALL1	Q8N3F8	863 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	STAG1	Q8WVM7	1258 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	CCDC102A	Q96A19	550 aa		12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	ATXN2	Q99700	1313 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.5	□□□□□ -0.41
TCF4-222	ENST00000564228	BIN1	O00499	593 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	SPTLC2	O15270	562 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	MBD4	O95243	580 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	E2F4	Q16254	413 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	GRIK5	Q16478	980 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	GRIPAP1	Q4V328	841 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	SOGA3	Q5TF21	947 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	ZNF384	Q8TF68	577 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	NSUN4	Q96CB9	384 aa	Known RBP	12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	NAA15	Q9BXJ9	866 aa	Known RBP	12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	ARMT1	Q9H993	441 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	SRCAP	Q6ZRS2	3230 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	FAM237A	A0A1B0GTK4	181 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	TMEM232	C9JQI7	657 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	KIF5C	O60282	957 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	ECE2	O60344	883 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	PRPF6	O94906	941 aa	Known RBP	12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	MCM3	P25205	808 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	SPECC1L	Q69YQ0	1117 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	TTLL5	Q6EMB2	1281 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	CEP120	Q8N960	986 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	PANX2	Q96RD6	677 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	PSMD1	Q99460	953 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	DSCC1	Q9BVC3	393 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	ZNF277	Q9NRM2	450 aa	Predicted RBP	12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	INTS13	Q9NVM9	706 aa		12.49	□□□□□ -0.41
TCF4-222	ENST00000564228	ZNF646	O15015	1829 aa	Predicted RBP	12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	PSME4	Q14997	1843 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	FAM205A	Q6ZU69	1335 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	RNF40	O75150	1001 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	PFKFB1	P16118	471 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	VSNL1	P62760	191 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	DHX32	Q7L7V1	743 aa	Known RBP	12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	PODN	Q7Z5L7	613 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	CNPY4	Q8N129	248 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	LCORL	Q8N3X6	602 aa		12.48	□□□□□ -0.41
TCF4-222	ENST00000564228	TBC1D22A	Q8WUA7	517 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms