RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.16□□□□□ -1.1
LRRC28-220ENST00000561253 KTN1Q86UP2 1357 aaKnown RBP8.16□□□□□ -1.1
LRRC28-220ENST00000561253 AGGF1Q8N302 714 aaeCLIP8.16□□□□□ -1.1
LRRC28-220ENST00000561253 TMEM130Q8N3G9 435 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 SLC43A3Q8NBI5 491 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 FBXO27Q8NI29 283 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 RASGRP4Q8TDF6 673 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 AKTIPQ9H8T0 292 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 CRYBG1Q9Y4K1 1723 aa8.16□□□□□ -1.1
LRRC28-220ENST00000561253 MARF1Q9Y4F3 1742 aaKnown RBP8.15□□□□□ -1.1
LRRC28-220ENST00000561253 USP54Q70EL1 1684 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 SPATA31A6Q5VVP1 1343 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 TTC21AQ8NDW8 1320 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 SYNGAP1Q96PV0 1343 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 F8W735 103 aaPredicted RBP8.15□□□□□ -1.1
LRRC28-220ENST00000561253 DNAJA1P31689 397 aaKnown RBP8.15□□□□□ -1.1
LRRC28-220ENST00000561253 CRKP46108 304 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 SEZ6Q53EL9 994 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 WIPI1Q5MNZ9 446 aaPredicted RBP8.15□□□□□ -1.1
LRRC28-220ENST00000561253 HDXQ7Z353 690 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 C12orf50Q8NA57 414 aaPredicted RBP8.15□□□□□ -1.1
LRRC28-220ENST00000561253 LRRC3Q9BY71 257 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 TERF2IPQ9NYB0 399 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 STK17AQ9UEE5 414 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 SNCAIPQ9Y6H5 919 aa8.15□□□□□ -1.1
LRRC28-220ENST00000561253 SLIT3O75094 1523 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 NSD3Q9BZ95 1437 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 DCDC2CA8MYV0 355 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 FYB1O15117 783 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 ID3Q02535 119 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 ARID5AQ03989 594 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 INPP5AQ14642 412 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 LRFN4Q6PJG9 635 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 NME9Q86XW9 330 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 SMG8Q8ND04 991 aaKnown RBP8.14□□□□□ -1.11
LRRC28-220ENST00000561253 PLPPR2Q96GM1 343 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 SUGCTQ9HAC7 445 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 PICK1Q9NRD5 415 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 AP4E1Q9UPM8 1137 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 CSADQ9Y600 493 aa8.14□□□□□ -1.11
LRRC28-220ENST00000561253 ABCA3Q99758 1704 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 ALX3O95076 343 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 GLB1P16278 677 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 MCM4P33991 863 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 CDK8P49336 464 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 SF3A1Q15459 793 aaKnown RBP8.13□□□□□ -1.11
LRRC28-220ENST00000561253 ZC3H12AQ5D1E8 599 aaKnown RBP8.13□□□□□ -1.11
LRRC28-220ENST00000561253 ANKRD34AQ69YU3 496 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 REC114Q7Z4M0 266 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 HDGFL2Q7Z4V5 671 aaPredicted RBP8.13□□□□□ -1.11
LRRC28-220ENST00000561253 SLITRK4Q8IW52 837 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 CEP41Q9BYV8 373 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 PANK3Q9H999 370 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 EFR3BQ9Y2G0 817 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 NFAT5O94916 1531 aa8.13□□□□□ -1.11
LRRC28-220ENST00000561253 CPDO75976 1380 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 TMPRSS2O15393 492 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 SART1O43290 800 aaKnown RBP8.12□□□□□ -1.11
LRRC28-220ENST00000561253 ADH5P11766 374 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 ATF4P18848 351 aaPredicted RBP8.12□□□□□ -1.11
LRRC28-220ENST00000561253 SOX4Q06945 474 aaPredicted RBP8.12□□□□□ -1.11
LRRC28-220ENST00000561253 COL9A2Q14055 689 aaPredicted RBP8.12□□□□□ -1.11
LRRC28-220ENST00000561253 C12orf40Q86WS4 652 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 SREK1Q8WXA9 508 aaKnown RBP8.12□□□□□ -1.11
LRRC28-220ENST00000561253 SEC16BQ96JE7 1060 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 TANGO6Q9C0B7 1094 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 BRMS1Q9HCU9 246 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 GINM1Q9NU53 330 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 PPP1R9AQ9ULJ8 1098 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 PCDHGC5Q9Y5F6 944 aa8.12□□□□□ -1.11
LRRC28-220ENST00000561253 NPC1L1Q9UHC9 1359 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 PRAMEF27A3QJZ7 478 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 GFRA2O00451 464 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 DRD2P14416 443 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 IREB2P48200 963 aaKnown RBP8.11□□□□□ -1.11
LRRC28-220ENST00000561253 NASPP49321 788 aaPredicted RBP8.11□□□□□ -1.11
LRRC28-220ENST00000561253 ZNF165P49910 485 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 ERVK-24P63145 666 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 DYMQ7RTS9 669 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.11□□□□□ -1.11
LRRC28-220ENST00000561253 WFDC12Q8WWY7 111 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 ATXN3LQ9H3M9 355 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 CRIM1Q9NZV1 1036 aa8.11□□□□□ -1.11
LRRC28-220ENST00000561253 PHRF1Q9P1Y6 1649 aaKnown RBP8.11□□□□□ -1.11
LRRC28-220ENST00000561253 SLIT2O94813 1529 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 GRIN3BO60391 1043 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 TIAF1O95411 115 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 GCP02774 474 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 ADGRE1Q14246 886 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 FANCD2OSQ96PS1 177 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.1□□□□□ -1.11
LRRC28-220ENST00000561253 USP35Q9P2H5 1018 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 RGS17Q9UGC6 210 aaPredicted RBP8.1□□□□□ -1.11
LRRC28-220ENST00000561253 PRKAG2Q9UGJ0 569 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 HIF3AQ9Y2N7 669 aa8.1□□□□□ -1.11
LRRC28-220ENST00000561253 GAS2O43903 313 aaKnown RBP8.09□□□□□ -1.11
LRRC28-220ENST00000561253 NOS3P29474 1203 aa8.09□□□□□ -1.11
LRRC28-220ENST00000561253 SOX9P48436 509 aa8.09□□□□□ -1.11
LRRC28-220ENST00000561253 PDE4BQ07343 736 aa8.09□□□□□ -1.11
LRRC28-220ENST00000561253 MBTPS1Q14703 1052 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms