RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 CCDC84Q86UT8 332 aaPredicted RBP15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 MCF2L2Q86YR7 1114 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 ENAHQ8N8S7 591 aaPredicted RBP15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 UPF3AQ9H1J1 476 aaKnown RBP15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 RTEL1Q9NZ71 1219 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 DNM3Q9UQ16 869 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 BLVRAP53004 296 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 KHDRBS2Q5VWX1 349 aaKnown RBP15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 ANKLE2Q86XL3 938 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZNF263O14978 683 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 CD19P15391 556 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 NME8Q8N427 588 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 MAGEB6Q8N7X4 407 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 ARHGEF10LQ9HCE6 1279 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 PICK1Q9NRD5 415 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 PTPDC1A2A3K4 754 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 COG4Q9H9E3 785 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 MCM9Q9NXL9 1143 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 SLC9C2Q5TAH2 1124 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 HDAC4P56524 1084 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 DAB2P98082 770 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 APOBRQ0VD83 1088 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 SLC12A1Q13621 1099 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 KIAA2013Q8IYS2 634 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 GSDMAQ96QA5 445 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 RAB3GAP1Q15042 981 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 DBNLQ9UJU6 430 aaKnown RBP15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 CYB5RLQ6IPT4 315 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 CEP70Q8NHQ1 597 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 PKD2L1Q9P0L9 805 aa15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.15■□□□□ 0.02
CSPG4P12-202ENST00000559989 KCNK3O14649 394 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 N4BP2L2Q92802 583 aaPredicted RBP15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 GDAP1L1Q96MZ0 367 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 MKL2Q9ULH7 1088 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 PASKQ96RG2 1323 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 WIZO95785 1651 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 NELFBQ8WX92 580 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 LZICQ8WZA0 190 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 INTS4Q96HW7 963 aaKnown RBP15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 FGFR1OP2Q9NVK5 253 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 IFNB1P01574 187 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 SCYL2Q6P3W7 929 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 PGBD1Q96JS3 809 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 AZI2Q9H6S1 392 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 TRIM27P14373 513 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 TSHZ3Q63HK5 1081 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 ZNF280CQ8ND82 737 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 TYW5A2RUC4 315 aaKnown RBP15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 TYW1BQ6NUM6 668 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 CCDC51Q96ER9 411 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 SBNO2Q9Y2G9 1366 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 ZCRB1Q8TBF4 217 aaKnown RBP15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 ANO3Q9BYT9 981 aa15.14■□□□□ 0.01
CSPG4P12-202ENST00000559989 TMEM232C9JQI7 657 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 CUTAO60888 179 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 ZNF75DP51815 510 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 PMS1P54277 932 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 EXOC5O00471 708 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 KDM1AO60341 852 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 ATF7P17544 494 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 PUM3Q15397 648 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 CHCHD3Q9NX63 227 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 SLC4A1P02730 911 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 STX19Q8N4C7 294 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 INTS9Q9NV88 658 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 KCNH3Q9ULD8 1083 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 ATP5J2-PTCD1G3V325 749 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 EXOC3O60645 756 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 OTUD6AQ7L8S5 288 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 TNNI1P19237 187 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 YARSP54577 528 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 DYNC1I2Q13409 638 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 RHPN1Q8TCX5 695 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 FAM135AQ9P2D6 1515 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 DEXIO95424 95 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 STAT1P42224 750 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 DHX32Q7L7V1 743 aaKnown RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 KLHL29Q96CT2 875 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 TRPC5Q9UL62 973 aaPredicted RBP15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 KIAA1107Q9UPP5 1409 aa15.13■□□□□ 0.01
CSPG4P12-202ENST00000559989 SERPINB2P05120 415 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 SLMAPQ14BN4 828 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 CALCRLQ16602 461 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 NCAPH2Q6IBW4 605 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 MRPS15P82914 257 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 LSM14BQ9BX40 385 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 KIF17Q9P2E2 1029 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 STX18Q9P2W9 335 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 A6NJR5 290 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 N4BP1O75113 896 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 BBS5Q8N3I7 341 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 OR9Q1Q8NGQ5 310 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 THUMPD2Q9BTF0 503 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 NFKBIL1Q9UBC1 381 aaPredicted RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 XPAP23025 273 aaPredicted RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 TRAIPQ9BWF2 469 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 UBN1Q9NPG3 1134 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms