RNA–Protein interactions for RNA: ENST00000556541.1

FOXN3-212, Transcript of forkhead box N3, humanhuman

TSL 3

Gene FOXN3, Length 388 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3-212ENST00000556541 ZNF543Q08ER8 600 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 MTMR2Q13614 643 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 SLFN13Q68D06 897 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 LRRC47Q8N1G4 583 aaKnown RBP13.14□□□□□ -0.31
FOXN3-212ENST00000556541 FANCBQ8NB91 859 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 CTCFLQ8NI51 663 aaPredicted RBP13.14□□□□□ -0.31
FOXN3-212ENST00000556541 GTF3C6Q969F1 213 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 OTUD5Q96G74 571 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 MS4A4AQ96JQ5 239 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 EMILIN3Q9NT22 766 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 TMOD4Q9NZQ9 345 aa13.14□□□□□ -0.31
FOXN3-212ENST00000556541 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.14□□□□□ -0.31
FOXN3-212ENST00000556541 GOLGA8BA8MQT2 603 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 K7ELQ4 463 aaPredicted RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 PARP1P09874 1014 aaKnown RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 BMP3P12645 472 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 VCAM1P19320 739 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 SLC1A4P43007 532 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 METAP2P50579 478 aaKnown RBP eCLIP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 ZNF157P51786 506 aaPredicted RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 PABPC4Q13310 644 aaKnown RBP eCLIP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 CUL4AQ13619 759 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 MOGSQ13724 837 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 ME3Q16798 604 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 LBX2Q6XYB7 198 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 FAM160B2Q86V87 743 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 LLPHQ9BRT6 129 aaKnown RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 SPZ1Q9BXG8 430 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 TSHZ2Q9NRE2 1034 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 RBM27Q9P2N5 1060 aaKnown RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 MAD2L2Q9UI95 211 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 ABT1Q9ULW3 272 aaKnown RBP13.13□□□□□ -0.31
FOXN3-212ENST00000556541 AGTPBP1Q9UPW5 1226 aa13.13□□□□□ -0.31
FOXN3-212ENST00000556541 TRIM75PA6NK02 468 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 GOLGA8AA7E2F4 631 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 CD2BP2O95400 341 aaKnown RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 IFNAR1P17181 557 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 HMGCS2P54868 508 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 ATP2B2Q01814 1243 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 NOGQ13253 232 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 RTN1Q16799 776 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 DEFB115Q30KQ5 88 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 ANKRD23Q86SG2 305 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 CCDC84Q86UT8 332 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 FAM177A1Q8N128 213 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 RGS22Q8NE09 1264 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 GTF3C2Q8WUA4 911 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 CHURC1Q8WUH1 139 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 CNKSR2Q8WXI2 1034 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 INTS4Q96HW7 963 aaKnown RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 TMX3Q96JJ7 454 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 SLKQ9H2G2 1235 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 FAM217BQ9NTX9 383 aaPredicted RBP13.12□□□□□ -0.31
FOXN3-212ENST00000556541 FEM1BQ9UK73 627 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 PNMA2Q9UL42 364 aa13.12□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L15C9J2P7 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L13C9JLJ4 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L11C9JVI0 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L18D6R9N7 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L22D6RA61 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L17D6RBQ6 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L19D6RCP7 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L20D6RJB6 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 CDKL5O76039 1030 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 USP17L24Q0WX57 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 FUT2Q10981 343 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 SREBF2Q12772 1141 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 BECN1Q14457 450 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 NTRK3Q16288 839 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 KIAA1755Q5JYT7 1200 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 CPLX2Q6PUV4 134 aaKnown RBP13.11□□□□□ -0.31
FOXN3-212ENST00000556541 CATSPERGQ6ZRH7 1159 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 TMTC3Q6ZXV5 915 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 MICU3Q86XE3 530 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 TEX2Q8IWB9 1127 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 MTMR8Q96EF0 704 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 RIOX1Q9H6W3 641 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 ADAMTS5Q9UNA0 930 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 STK36Q9NRP7 1315 aa13.11□□□□□ -0.31
FOXN3-212ENST00000556541 KLRF2D3W0D1 207 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 ANP32AP39687 249 aaKnown RBP13.1□□□□□ -0.31
FOXN3-212ENST00000556541 TM4SF4P48230 202 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 STAT2P52630 851 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 SCRN1Q12765 414 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 GPAT2Q6NUI2 795 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 NUP133Q8WUM0 1156 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 RNF26Q9BY78 433 aaPredicted RBP13.1□□□□□ -0.31
FOXN3-212ENST00000556541 MAF1Q9H063 256 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 PNMA3Q9UL41 463 aa13.1□□□□□ -0.31
FOXN3-212ENST00000556541 COL11A1P12107 1806 aaPredicted RBP13.09□□□□□ -0.31
FOXN3-212ENST00000556541 CCL15-CCL14A0A0B4J2E2 113 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 hCG_1984214I3L0E3 225 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 LARGE1O95461 756 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 CDC27P30260 824 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 MAP2K2P36507 400 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 HMGN5P82970 282 aaKnown RBP13.09□□□□□ -0.31
FOXN3-212ENST00000556541 TRAF1Q13077 416 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 CCL15Q16663 113 aa13.09□□□□□ -0.31
FOXN3-212ENST00000556541 FAM83BQ5T0W9 1011 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms