RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 BTBD7Q9P203 1132 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 GJD2Q9UKL4 321 aa24.42■■□□□ 1.5
CCDC88C-210ENST00000555995 KIAA0100Q14667 2235 aaKnown RBP24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 NDUFB10O96000 172 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 COPB2P35606 906 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 FAM83BQ5T0W9 1011 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 AKNAD1Q5T1N1 836 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 MFSD6Q6ZSS7 791 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 SPATC1LQ9H0A9 340 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 PPP1R9AQ9ULJ8 1098 aa24.41■■□□□ 1.5
CCDC88C-210ENST00000555995 COL11A1P12107 1806 aaPredicted RBP24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 HMGCRP04035 888 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 IMMTQ16891 758 aaKnown RBP24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 WDR78Q5VTH9 848 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 POTEEQ6S8J3 1075 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 ATG4CQ96DT6 458 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 APBA2Q99767 749 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 STX8Q9UNK0 236 aa24.4■■□□□ 1.5
CCDC88C-210ENST00000555995 SLC15A5A6NIM6 579 aa24.39■■□□□ 1.49
CCDC88C-210ENST00000555995 SLC25A27O95847 323 aa24.39■■□□□ 1.49
CCDC88C-210ENST00000555995 SLF1Q9BQI6 1058 aa24.39■■□□□ 1.49
CCDC88C-210ENST00000555995 MROH8Q9H579 483 aa24.39■■□□□ 1.49
CCDC88C-210ENST00000555995 ADAMTS5Q9UNA0 930 aa24.39■■□□□ 1.49
CCDC88C-210ENST00000555995 STRNO43815 780 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 PEX10O60683 326 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 INHAP05111 366 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 ELNP15502 786 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 HAND2P61296 217 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 MAP2K5Q13163 448 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 RRP12Q5JTH9 1297 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 MORN1Q5T089 497 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 LRRC47Q8N1G4 583 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 PRPF38AQ8NAV1 312 aaKnown RBP24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 ESR2Q92731 530 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 TCP11L1Q9NUJ3 509 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 FEM1BQ9UK73 627 aa24.38■■□□□ 1.49
CCDC88C-210ENST00000555995 POTEFA5A3E0 1075 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 FDX1P10109 184 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 CCL5P13501 91 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 CHMLP26374 656 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 PLS1Q14651 629 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 CCDC178Q5BJE1 867 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 SLFN13Q68D06 897 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 SAMD1Q6SPF0 538 aaPredicted RBP24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 GMCL1Q96IK5 515 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 MOV10L1Q9BXT6 1211 aaKnown RBP24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 RNF208Q9H0X6 261 aa24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 CTDP1Q9Y5B0 961 aaPredicted RBP24.37■■□□□ 1.49
CCDC88C-210ENST00000555995 VWA5AO00534 786 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 GJB1P08034 283 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 BMP3P12645 472 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 ZKSCAN1P17029 563 aaPredicted RBP24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 CYP2B6P20813 491 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 PTPREP23469 700 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 GRB14Q14449 540 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 USP6NLQ92738 828 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 CCDC136Q96JN2 1154 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 SLC5A4Q9NY91 659 aa24.36■■□□□ 1.49
CCDC88C-210ENST00000555995 SLC1A4P43007 532 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 NOVP48745 357 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 MTFR1Q15390 333 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 FAM160B2Q86V87 743 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 ABRAQ8N0Z2 381 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 CNNM2Q9H8M5 875 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 FBXO28Q9NVF7 368 aa24.35■■□□□ 1.49
CCDC88C-210ENST00000555995 MYCP01106 439 aaPredicted RBP24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 ERCC3P19447 782 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 STAT2P52630 851 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 NCAPG2Q86XI2 1143 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 TBC1D10CQ8IV04 446 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 CHURC1Q8WUH1 139 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 TTC14Q96N46 770 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 NUP88Q99567 741 aaPredicted RBP24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 IL17RBQ9NRM6 502 aa24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 ISY1Q9ULR0 285 aaKnown RBP24.34■■□□□ 1.49
CCDC88C-210ENST00000555995 ZBED4O75132 1171 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 CENPBP07199 599 aaPredicted RBP24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 HOXC6P09630 235 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 TOP1P11387 765 aaKnown RBP24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 TMEM132BQ14DG7 1078 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 IQCA1Q86XH1 822 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 RIOX2Q8IUF8 465 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 TRIB2Q92519 343 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 TEX13BQ9BXU2 312 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 KRT23Q9C075 422 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 NBPF3Q9H094 633 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 INCENPQ9NQS7 918 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 TACC3Q9Y6A5 838 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 CENPFP49454 3210 aa24.33■■□□□ 1.49
CCDC88C-210ENST00000555995 PLA2G6O60733 806 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 STAT3P40763 770 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 GJA8P48165 433 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 OAZ1P54368 228 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 DCAF4Q8WV16 495 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 UNC93B1Q9H1C4 597 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 ZNF214Q9UL59 606 aaPredicted RBP24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 RPTORQ8N122 1335 aa24.32■■□□□ 1.48
CCDC88C-210ENST00000555995 ATP2A1O14983 1001 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 SGSM2O43147 1006 aa24.31■■□□□ 1.48
CCDC88C-210ENST00000555995 NMT2O60551 498 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms