RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 TNPO1Q92973 898 aaKnown RBP11.84□□□□□ -0.51
SRP54-208ENST00000555557 CHAMP1Q96JM3 812 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 ALG1Q9BT22 464 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 VAT1LQ9HCJ6 419 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 TMX2Q9Y320 296 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 CNTNAP5Q8WYK1 1306 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 H3BQV1 296 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 PPP1R12BO60237 982 aaPredicted RBP11.84□□□□□ -0.51
SRP54-208ENST00000555557 PTPRAP18433 802 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 PDCP20941 246 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 SLC16A2P36021 539 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 ZNF543Q08ER8 600 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 PKN1Q16512 942 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 IFFO2Q5TF58 517 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.84□□□□□ -0.51
SRP54-208ENST00000555557 FERMT3Q86UX7 667 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 ZNF408Q9H9D4 720 aa11.84□□□□□ -0.51
SRP54-208ENST00000555557 BAZ2BQ9UIF8 2168 aaKnown RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 PRPF3O43395 683 aaKnown RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 DEXIO95424 95 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 ZSCAN22P10073 491 aaPredicted RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 GNAQP50148 359 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 C1QTNF8P60827 252 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 MAP3K9P80192 1104 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 AKAP17AQ02040 695 aaKnown RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 TTLL12Q14166 644 aaPredicted RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 ASPRV1Q53RT3 343 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 GMCL1P1Q8NEA9 526 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 C8orf76Q96K31 380 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 RNF26Q9BY78 433 aaPredicted RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 PICK1Q9NRD5 415 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 KIF3AQ9Y496 699 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 ZHX2Q9Y6X8 837 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 WDR33Q9C0J8 1336 aaKnown RBP11.83□□□□□ -0.52
SRP54-208ENST00000555557 STK36Q9NRP7 1315 aa11.83□□□□□ -0.52
SRP54-208ENST00000555557 NF2P35240 595 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 SPP2Q13103 211 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 VGLL4Q14135 290 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 LDHDQ86WU2 507 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 HOMER1Q86YM7 354 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 FEZ1Q99689 392 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 MYH4Q9Y623 1939 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 BMP3P12645 472 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 MTMR2Q13614 643 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 GPATCH4Q5T3I0 446 aaKnown RBP11.82□□□□□ -0.52
SRP54-208ENST00000555557 FBXO18Q8NFZ0 1043 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 DCAF4Q8WV16 495 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 CNKSR2Q8WXI2 1034 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 SHISA4Q96DD7 197 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 CLMNQ96JQ2 1002 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 LZTS2Q9BRK4 669 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 VCPKMTQ9H867 229 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 GOPCQ9HD26 462 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 GINM1Q9NU53 330 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 VPS54Q9P1Q0 977 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 SNCAIPQ9Y6H5 919 aa11.82□□□□□ -0.52
SRP54-208ENST00000555557 TRIM75PA6NK02 468 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 TMEM232C9JQI7 657 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 F13A1P00488 732 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 IREB2P48200 963 aaKnown RBP11.81□□□□□ -0.52
SRP54-208ENST00000555557 FAM83BQ5T0W9 1011 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 MCTP1Q6DN14 999 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 ADGRF4Q8IZF3 695 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 GMCL1Q96IK5 515 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 PIGSQ96S52 555 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 SPZ1Q9BXG8 430 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 GPBP1L1Q9HC44 474 aaPredicted RBP11.81□□□□□ -0.52
SRP54-208ENST00000555557 KCNJ14Q9UNX9 436 aa11.81□□□□□ -0.52
SRP54-208ENST00000555557 USP17L10C9JJH3 530 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 SNAP25P60880 206 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 PFKFB3Q16875 520 aaPredicted RBP11.8□□□□□ -0.52
SRP54-208ENST00000555557 NOL9Q5SY16 702 aaKnown RBP11.8□□□□□ -0.52
SRP54-208ENST00000555557 KRT40Q6A162 431 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 FAM173BQ6P4H8 233 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 ZNF280CQ8ND82 737 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 WASF1Q92558 559 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 GPKOWQ92917 476 aaPredicted RBP eCLIP11.8□□□□□ -0.52
SRP54-208ENST00000555557 RIOX1Q9H6W3 641 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 SH2D4AQ9H788 454 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 ELP3Q9H9T3 547 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 JMJD4Q9H9V9 463 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 SYNPO2Q9UMS6 1093 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 CSADQ9Y600 493 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 SCG2P13521 617 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 IKQ13123 557 aaPredicted RBP11.8□□□□□ -0.52
SRP54-208ENST00000555557 SAMD1Q6SPF0 538 aaPredicted RBP11.8□□□□□ -0.52
SRP54-208ENST00000555557 WDR18Q9BV38 432 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 KIAA1683Q9H0B3 1180 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 AS3MTQ9HBK9 375 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 EMILIN3Q9NT22 766 aa11.8□□□□□ -0.52
SRP54-208ENST00000555557 SMARCA1P28370 1054 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 BACE1P56817 501 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 TRIM29Q14134 588 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 TYW1BQ6NUM6 668 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 ARMC9Q7Z3E5 817 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 HEATR3Q7Z4Q2 680 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 ANKRD13AQ8IZ07 590 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 RRP36Q96EU6 259 aaKnown RBP11.79□□□□□ -0.52
SRP54-208ENST00000555557 AFG3L2Q9Y4W6 797 aa11.79□□□□□ -0.52
SRP54-208ENST00000555557 ATAD5Q96QE3 1844 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms