RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DYNLL2Q96FJ2 89 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 NUP62CLQ9H1M0 184 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 CBX8Q9HC52 389 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 GEMIN8Q9NWZ8 242 aaKnown RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 SERPINB13Q9UIV8 391 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 DDX60LQ5H9U9 1706 aaKnown RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 TCHHQ07283 1943 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 PHIPQ8WWQ0 1821 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 LAMB1P07942 1786 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 RAD50Q92878 1312 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 A0A0D9SFI3 127 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 GSG1L2A8MUP6 293 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 USP17L12C9JPN9 530 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 USP17L21D6R901 530 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 GPAA1O43292 621 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 CA12O43570 354 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 ZFYP08048 801 aaPredicted RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 H2AFXP16104 143 aaPredicted RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 CDC25BP30305 580 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 GTF2A2P52657 109 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 INHBEP58166 350 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 TPM4P67936 248 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 GABPAQ06546 454 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 DGKZQ13574 1117 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 ZMYM1Q5SVZ6 1142 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 CTR9Q6PD62 1173 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 CCDC129Q6ZRS4 1044 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 REM2Q8IYK8 340 aaPredicted RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 PICK1Q9NRD5 415 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 ATP8A2Q9NTI2 1148 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 SMC3Q9UQE7 1217 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 AFG3L2Q9Y4W6 797 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 FHOD1Q9Y613 1164 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 MKI67P46013 3256 aaKnown RBP8.8□□□□□ -1
LIMA1-216ENST00000552909 NAV1Q8NEY1 1877 aa8.8□□□□□ -1
LIMA1-216ENST00000552909 DOCK1Q14185 1865 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 TRIM75PA6NK02 468 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 KIF2AO00139 706 aaPredicted RBP8.79□□□□□ -1
LIMA1-216ENST00000552909 SHMT1P34896 483 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 PTH1RQ03431 593 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 DNM1Q05193 864 aaKnown RBP8.79□□□□□ -1
LIMA1-216ENST00000552909 SNAPC2Q13487 334 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 MOGSQ13724 837 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 MCMDC2Q4G0Z9 681 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 ANO6Q4KMQ2 910 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 TTC6Q86TZ1 520 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 LSG1Q9H089 658 aaKnown RBP8.79□□□□□ -1
LIMA1-216ENST00000552909 EPB41L4AQ9HCS5 686 aaPredicted RBP8.79□□□□□ -1
LIMA1-216ENST00000552909 SAGE1Q9NXZ1 904 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 KCNH4Q9UQ05 1017 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 ATAD5Q96QE3 1844 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 USP27XA6NNY8 438 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 BTBD19C9JJ37 291 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 FOXP2O15409 715 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 PNMA6AP0CW24 399 aaPredicted RBP8.79□□□□□ -1
LIMA1-216ENST00000552909 TATDN1Q6P1N9 297 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 LRRC8AQ8IWT6 810 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 STK11IPQ8N1F8 1099 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 NEK11Q8NG66 645 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 EHD4Q9H223 541 aa8.79□□□□□ -1
LIMA1-216ENST00000552909 PTPRFP10586 1907 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 EPB41L2O43491 1005 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 GH2P01242 217 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 CETPP11597 493 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 NOP2P46087 812 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 SPP2Q13103 211 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 GPS2Q13227 327 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 CRHR2Q13324 411 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 CAMK4Q16566 473 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 LRRFIP1Q32MZ4 808 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 CCDC144BQ3MJ40 725 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 C12orf60Q5U649 245 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 VPS53Q5VIR6 699 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 SYT10Q6XYQ8 523 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 KRBA2Q6ZNG9 492 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 ZNF589Q86UQ0 364 aaPredicted RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 CCDC144CPQ8IYA2 1237 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 SECISBP2LQ93073 1101 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 TNMDQ9H2S6 317 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 CWC15Q9P013 229 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 CXCL11O14625 94 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 DHX16O60231 1041 aaKnown RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 APPP05067 770 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 PLA2G4AP47712 749 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 CLCN6P51797 869 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 GTF2A1P52655 376 aaPredicted RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 CERKLQ49MI3 558 aaPredicted RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 GPAT2Q6NUI2 795 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 TICAM2Q86XR7 235 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 ZNF296Q8WUU4 475 aaPredicted RBP8.78□□□□□ -1
LIMA1-216ENST00000552909 ZBTB9Q96C00 473 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 HELLSQ9NRZ9 838 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 ZBTB21Q9ULJ3 1066 aa8.78□□□□□ -1
LIMA1-216ENST00000552909 A0A0G2JLL6 359 aaPredicted RBP8.77□□□□□ -1.01
LIMA1-216ENST00000552909 USP17L5A8MUK1 530 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 MINDY4BA8MYZ0 360 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 PATL2C9JE40 543 aaKnown RBP8.77□□□□□ -1.01
LIMA1-216ENST00000552909 MYO1CO00159 1063 aa8.77□□□□□ -1.01
LIMA1-216ENST00000552909 ASNSP08243 561 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms