RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 ANO2Q9NQ90 1003 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 RBPJLQ9UBG7 517 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 FAM198AQ9UFP1 575 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 DOCK2Q92608 1830 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 TECTAO75443 2155 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 FAM186AA6NE01 2351 aa9.95□□□□□ -0.82
CHD4-208ENST00000540960 SGSM2O43147 1006 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 IGSF3O75054 1194 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 TIMP1P01033 207 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 PDIA4P13667 645 aaKnown RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 ID4P47928 161 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 HMGCS2P54868 508 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 TFCP2Q12800 502 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 SPP2Q13103 211 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 CHAF1AQ13111 956 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 LRRC41Q15345 812 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 TTF1Q15361 905 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 MFSD14CQ5VZR4 134 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 PPP2R2DQ66LE6 453 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 ZSCAN25Q6NSZ9 544 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 SAMD1Q6SPF0 538 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 PROCA1Q8NCQ7 364 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 GPRC5AQ8NFJ5 357 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 NPLOC4Q8TAT6 608 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 CHMP4CQ96CF2 233 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 EDC3Q96F86 508 aaKnown RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 ZNF512BQ96KM6 892 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 FAM84BQ96KN1 310 aaPredicted RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 HAUS7Q99871 368 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 FSD1Q9BTV5 496 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 CWC22Q9HCG8 908 aaKnown RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 ALG13Q9NP73 1137 aaKnown RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 CNNM1Q9NRU3 951 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 RALYQ9UKM9 306 aaKnown RBP9.94□□□□□ -0.82
CHD4-208ENST00000540960 NCOR2Q9Y618 2525 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 CACNA1HO95180 2353 aa9.94□□□□□ -0.82
CHD4-208ENST00000540960 SOWAHBA6NEL2 793 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 IGHA2P01877 340 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 UQCRFS1P1P0C7P4 283 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 CYBAP13498 195 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 PSMA5P28066 241 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 MAP2K5Q13163 448 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 MFSD5Q6N075 450 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 CDC42EP5Q6NZY7 148 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 TMED8Q6PL24 325 aaPredicted RBP9.93□□□□□ -0.82
CHD4-208ENST00000540960 LDHAL6AQ6ZMR3 332 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 SH3BP5LQ7L8J4 393 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 ASCL5Q7RTU5 278 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 PLEKHH3Q7Z736 793 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.93□□□□□ -0.82
CHD4-208ENST00000540960 MFSD14AQ96MC6 490 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 NEUROD6Q96NK8 337 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 TBC1D2Q9BYX2 928 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 HMG20BQ9P0W2 317 aa9.93□□□□□ -0.82
CHD4-208ENST00000540960 K7ELQ4 463 aaPredicted RBP9.92□□□□□ -0.82
CHD4-208ENST00000540960 GTPBP6O43824 516 aaPredicted RBP9.92□□□□□ -0.82
CHD4-208ENST00000540960 MAPK4P31152 587 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 HIBADHP31937 336 aaKnown RBP9.92□□□□□ -0.82
CHD4-208ENST00000540960 KRT32Q14532 448 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 METTL24Q5JXM2 366 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 ATG9AQ7Z3C6 839 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.92□□□□□ -0.821e-7■■■□□ 14.9
CHD4-208ENST00000540960 CCDC8Q9H0W5 538 aaPredicted RBP9.92□□□□□ -0.82
CHD4-208ENST00000540960 SNRKQ9NRH2 765 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 CHMP5Q9NZZ3 219 aa9.92□□□□□ -0.82
CHD4-208ENST00000540960 KMT2EQ8IZD2 1858 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 CTNND1O60716 968 aaKnown RBP9.91□□□□□ -0.82
CHD4-208ENST00000540960 ARHGEF15O94989 841 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 HSPA4P34932 840 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 ATP2B2Q01814 1243 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 PPIGQ13427 754 aaKnown RBP eCLIP9.91□□□□□ -0.821e-6■■□□□ 13
CHD4-208ENST00000540960 PUM3Q15397 648 aaKnown RBP9.91□□□□□ -0.82
CHD4-208ENST00000540960 TTC39AQ5SRH9 613 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 PRAMEF19Q5SWL8 479 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 KBTBD3Q8NAB2 608 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 LPIN2Q92539 896 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 MRIQ9BWK5 157 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 TM6SF1Q9BZW5 370 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 HELLSQ9NRZ9 838 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 DBNLQ9UJU6 430 aaKnown RBP9.91□□□□□ -0.82
CHD4-208ENST00000540960 TBX21Q9UL17 535 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 PHF24Q9UPV7 400 aa9.91□□□□□ -0.82
CHD4-208ENST00000540960 GAKO14976 1311 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 A0A1B0GUL7 405 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 IFIT1P09914 478 aaKnown RBP9.9□□□□□ -0.82
CHD4-208ENST00000540960 SLC5A1P13866 664 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 HERVK_113P62684 666 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ERVK-9P63128 1117 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ERVK-24P63145 666 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 MAP3K10Q02779 954 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ANKRD1Q15327 319 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ATP2B3Q16720 1220 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 FAM47AQ5JRC9 791 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 HHIPL2Q6UWX4 724 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 CWC27Q6UX04 472 aaKnown RBP9.9□□□□□ -0.82
CHD4-208ENST00000540960 SPRED2Q7Z698 418 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 ZNF594Q96JF6 807 aaPredicted RBP9.9□□□□□ -0.82
CHD4-208ENST00000540960 BOLA2Q9H3K6 86 aa9.9□□□□□ -0.82
CHD4-208ENST00000540960 GNL3LQ9NVN8 582 aaKnown RBP9.9□□□□□ -0.82
CHD4-208ENST00000540960 U3KPZ7 1027 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms