RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 LRRC2Q9BYS8 371 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 PNMA3Q9UL41 463 aa13.95□□□□□ -0.18
CLIP1-208ENST00000537004 GNAT2P19087 354 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 VCAM1P19320 739 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 OSBPP22059 807 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 HOXA7P31268 230 aaPredicted RBP13.94□□□□□ -0.18
CLIP1-208ENST00000537004 HAND2P61296 217 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 SBK1Q52WX2 424 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 KIAA1755Q5JYT7 1200 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 GIMAP6Q6P9H5 292 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L2Q6R6M4 530 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 GTF3C6Q969F1 213 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 KIAA1683Q9H0B3 1180 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 TXNRD2Q9NNW7 524 aa13.94□□□□□ -0.18
CLIP1-208ENST00000537004 PABPC4Q13310 644 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLIP1-208ENST00000537004 TMEM179Q6ZVK1 233 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 SH3TC2Q8TF17 1288 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLIP1-208ENST00000537004 HERVK_113P62684 666 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 ATP2B2Q01814 1243 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 ICA1Q05084 483 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 PRKCZQ05513 592 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 SPICE1Q8N0Z3 855 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 AGXT2Q9BYV1 514 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 INCENPQ9NQS7 918 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 GABRQQ9UN88 632 aa13.93□□□□□ -0.18
CLIP1-208ENST00000537004 KIAA0100Q14667 2235 aaKnown RBP13.93□□□□□ -0.18
CLIP1-208ENST00000537004 F13A1P00488 732 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 RASA1P20936 1047 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 ARHGEF6Q15052 776 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 FAM110CQ1W6H9 321 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 FOXD4L6Q3SYB3 417 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-208ENST00000537004 FOXD4L3Q6VB84 417 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-208ENST00000537004 C12orf42Q96LP6 360 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 NAPBQ9H115 298 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 MKNK2Q9HBH9 465 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 SRRDQ9UH36 339 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 LOC285556D6RIA3 1793 aa13.92□□□□□ -0.18
CLIP1-208ENST00000537004 FSD2A1L4K1 749 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 ZNF213O14771 459 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 FCGRTP55899 365 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 Q3C1V9 767 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 SLC9C1Q4G0N8 1177 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 CCDC17Q96LX7 622 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 NACAP1Q9BZK3 213 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 RPAP3Q9H6T3 665 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-208ENST00000537004 RBPJLQ9UBG7 517 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 MTMR6Q9Y217 621 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 GOLGA6L3A6NEY3 463 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 EEF2P13639 858 aaKnown RBP13.91□□□□□ -0.18
CLIP1-208ENST00000537004 PDIA4P13667 645 aaKnown RBP13.91□□□□□ -0.18
CLIP1-208ENST00000537004 PDCP20941 246 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 GCLCP48506 637 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-208ENST00000537004 USP14P54578 494 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 LARP1BQ659C4 914 aaKnown RBP13.91□□□□□ -0.18
CLIP1-208ENST00000537004 CHST3Q7LGC8 479 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 PAGR1Q9BTK6 254 aa13.91□□□□□ -0.18
CLIP1-208ENST00000537004 MYPNQ86TC9 1320 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 VPS37CA5D8V6 355 aaPredicted RBP13.9□□□□□ -0.18
CLIP1-208ENST00000537004 TNPO2O14787 897 aaKnown RBP13.9□□□□□ -0.18
CLIP1-208ENST00000537004 PFKFB2O60825 505 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 NCLP19338 710 aaKnown RBP13.9□□□□□ -0.18
CLIP1-208ENST00000537004 CTDSPL2Q05D32 466 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 PPARAQ07869 468 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 APOBRQ0VD83 1088 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 CATSPERGQ6ZRH7 1159 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 FBXL16Q8N461 479 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 GPT2Q8TD30 523 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 ATP6V1DQ9Y5K8 247 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 TACC3Q9Y6A5 838 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 ROBO3Q96MS0 1386 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L15C9J2P7 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L13C9JLJ4 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L11C9JVI0 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L18D6R9N7 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L22D6RA61 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L17D6RBQ6 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L19D6RCP7 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L20D6RJB6 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 RAD21O60216 631 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 FLT3LGP49771 235 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 USP17L24Q0WX57 530 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 SCRN1Q12765 414 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 L1TD1Q5T7N2 865 aaKnown RBP13.9□□□□□ -0.18
CLIP1-208ENST00000537004 MB21D2Q8IYB1 491 aaPredicted RBP13.9□□□□□ -0.18
CLIP1-208ENST00000537004 NCOA7Q8NI08 942 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 RAET1EQ8TD07 263 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 ARMC5Q96C12 935 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 NBPF3Q9H094 633 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 TMX2Q9Y320 296 aa13.9□□□□□ -0.18
CLIP1-208ENST00000537004 ZMYM6O95789 1325 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 POTEFA5A3E0 1075 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 GNRH1P01148 92 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 MCM5P33992 734 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 ALX1Q15699 326 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 FAM47AQ5JRC9 791 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 SAMD1Q6SPF0 538 aaPredicted RBP13.89□□□□□ -0.19
CLIP1-208ENST00000537004 RALYLQ86SE5 291 aaKnown RBP13.89□□□□□ -0.19
CLIP1-208ENST00000537004 UBE2Q2Q8WVN8 375 aa13.89□□□□□ -0.19
CLIP1-208ENST00000537004 ZNF333Q96JL9 665 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms