RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GSTP1P09211 210 aaKnown RBP7.93□□□□□ -1.14
USP28-202ENST00000535607 SETDB1Q15047 1291 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 RABEP1Q15276 862 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 DUOXA2Q1HG44 320 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 MAP1SQ66K74 1059 aaPredicted RBP7.93□□□□□ -1.14
USP28-202ENST00000535607 METTL16Q86W50 562 aaKnown RBP7.93□□□□□ -1.14
USP28-202ENST00000535607 KIAA0825Q8IV33 1275 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 KLHDC7BQ96G42 594 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 SPON2Q9BUD6 331 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 CAPN10Q9HC96 672 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 RAD18Q9NS91 495 aa7.93□□□□□ -1.14
USP28-202ENST00000535607 NHSL1Q5SYE7 1610 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 RGPD8O14715 1765 aaPredicted RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 PAGE1O75459 146 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 LETM1O95202 739 aaPredicted RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 PTMAP06454 111 aaKnown RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 TPM3P06753 285 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 MAOBP27338 520 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 EIF4A3P38919 411 aaKnown RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 SNRPNP63162 240 aaKnown RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 CHAF1AQ13111 956 aaPredicted RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 AGMOQ6ZNB7 445 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 MORC1Q86VD1 984 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 FBXO11Q86XK2 927 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 FMR1NBQ8N0W7 255 aaPredicted RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 NACC1Q96RE7 527 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 ZC3H12CQ9C0D7 883 aaKnown RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 COPRSQ9NQ92 184 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 DDX41Q9UJV9 622 aaKnown RBP7.92□□□□□ -1.14
USP28-202ENST00000535607 IL16Q14005 1332 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 SSH2Q76I76 1423 aa7.92□□□□□ -1.14
USP28-202ENST00000535607 BAG4O95429 457 aaKnown RBP7.91□□□□□ -1.14
USP28-202ENST00000535607 APBA3O96018 575 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 ELNP15502 786 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 NUCB1Q02818 461 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 LMNB2Q03252 620 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 SCARA3Q6AZY7 606 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 FAM184AQ8NB25 1140 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 PHC3Q8NDX5 983 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 JARID2Q92833 1246 aaPredicted RBP7.91□□□□□ -1.14
USP28-202ENST00000535607 PDLIM2Q96JY6 352 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 PRDM4Q9UKN5 801 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 TLR6Q9Y2C9 796 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 TTC21AQ8NDW8 1320 aa7.91□□□□□ -1.14
USP28-202ENST00000535607 MED1Q15648 1581 aaPredicted RBP7.91□□□□□ -1.14
USP28-202ENST00000535607 TRPM3Q9HCF6 1732 aaPredicted RBP7.91□□□□□ -1.14
USP28-202ENST00000535607 PIK3C2AO00443 1686 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 AHDC1Q5TGY3 1603 aaPredicted RBP7.9□□□□□ -1.14
USP28-202ENST00000535607 PF4P02776 101 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 SLFN14P0C7P3 912 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 RBM10P98175 930 aaKnown RBP7.9□□□□□ -1.14
USP28-202ENST00000535607 FAM160A1Q05DH4 1040 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 DMTNQ08495 405 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 CAMK2GQ13555 558 aaPredicted RBP7.9□□□□□ -1.14
USP28-202ENST00000535607 UVSSAQ2YD98 709 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 NAALADL2Q58DX5 795 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 DNTTIP2Q5QJE6 756 aaKnown RBP7.9□□□□□ -1.14
USP28-202ENST00000535607 LCE2AQ5TA79 106 aaPredicted RBP7.9□□□□□ -1.14
USP28-202ENST00000535607 ATF7IPQ6VMQ6 1270 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 CHD1LQ86WJ1 897 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 GAS2L3Q86XJ1 694 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 ITPRIPQ8IWB1 547 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 TCP11L2Q8N4U5 519 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 GOLM1Q8NBJ4 401 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 TRIM11Q96F44 468 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 SPATA32Q96LK8 384 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 C8orf37Q96NL8 207 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 SLC12A5Q9H2X9 1139 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 ACBD3Q9H3P7 528 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 PICK1Q9NRD5 415 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 DIAPH3Q9NSV4 1193 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 SMC4Q9NTJ3 1288 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 USP21Q9UK80 565 aa7.9□□□□□ -1.14
USP28-202ENST00000535607 SHPRHQ149N8 1683 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 ALS2Q96Q42 1657 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 PXDNQ92626 1479 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 OVOS2A0A0J9YW53 1432 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 OVOS2Q6IE36 1432 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 ACEP12821 1306 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 NPHP3Q7Z494 1330 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 RNF225M0QZC1 329 aaPredicted RBP7.89□□□□□ -1.15
USP28-202ENST00000535607 CDC45O75419 566 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 TRIM37O94972 964 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 SPATA31C1P0DKV0 1188 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 MCM2P49736 904 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 RIPK4P57078 832 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 SF3A1Q15459 793 aaKnown RBP7.89□□□□□ -1.15
USP28-202ENST00000535607 ZSCAN23Q3MJ62 389 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 HGSNATQ68CP4 663 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 LRSAM1Q6UWE0 723 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 LINC00114Q6XXX2 140 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 ACAD11Q709F0 780 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 TRIM42Q8IWZ5 723 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 GALNT11Q8NCW6 608 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 RUSC1Q9BVN2 902 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 MRPL18Q9H0U6 180 aaKnown RBP7.89□□□□□ -1.15
USP28-202ENST00000535607 KRT82Q9NSB4 513 aa7.89□□□□□ -1.15
USP28-202ENST00000535607 SBNO1A3KN83 1393 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 CNTNAP5Q8WYK1 1306 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 FAM229AH3BQW9 127 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms