RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 WHAMMP3Q1A5X7 153 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 CCDC148Q8NFR7 591 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 RASGRP4Q8TDF6 673 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 SMCR8Q8TEV9 937 aaPredicted RBP15.1■□□□□ 0.01
HDAC4-214ENST00000535493 PIGBQ92521 554 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 ABCC12Q96J65 1359 aa15.1■□□□□ 0.01
HDAC4-214ENST00000535493 POTEB2H3BUK9 544 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 GGCXP38435 758 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 DNAJC21Q5F1R6 531 aaKnown RBP15.09■□□□□ 0.01
HDAC4-214ENST00000535493 IRF2BP1Q8IU81 584 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 PHF20Q9BVI0 1012 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 PLA2G12BQ9BX93 195 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 ZBTB1Q9Y2K1 713 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 DDX60Q8IY21 1712 aaKnown RBP15.09■□□□□ 0.01
HDAC4-214ENST00000535493 MAP3K15Q6ZN16 1313 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 PDE2AO00408 941 aaPredicted RBP15.09■□□□□ 0.01
HDAC4-214ENST00000535493 CYP7A1P22680 504 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 MATR3P43243 847 aaKnown RBP eCLIP15.09■□□□□ 0.012e-6■■■■□ 21
HDAC4-214ENST00000535493 HERVK_113P62684 666 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 DYNLL1P63167 89 aaKnown RBP15.09■□□□□ 0.01
HDAC4-214ENST00000535493 PDE4CQ08493 712 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 TRIM28Q13263 835 aaKnown RBP15.09■□□□□ 0.01
HDAC4-214ENST00000535493 FAM71BQ8TC56 605 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 SMARCAL1Q9NZC9 954 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 MYH7P12883 1935 aa15.09■□□□□ 0.01
HDAC4-214ENST00000535493 UQCRFS1P1P0C7P4 283 aa15.08■□□□□ 0.01
HDAC4-214ENST00000535493 NPY5RQ15761 445 aa15.08■□□□□ 0.01
HDAC4-214ENST00000535493 EZH2Q15910 746 aaKnown RBP15.08■□□□□ 0.01
HDAC4-214ENST00000535493 WDR59Q6PJI9 974 aa15.08■□□□□ 0.01
HDAC4-214ENST00000535493 IPO4Q8TEX9 1081 aaKnown RBP15.08■□□□□ 0.01
HDAC4-214ENST00000535493 KIF1AQ12756 1690 aa15.08■□□□□ 0.01
HDAC4-214ENST00000535493 PKD1L3Q7Z443 1732 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 C2orf54Q08AI8 447 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 SEC23AQ15436 765 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 FAM47AQ5JRC9 791 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 IFIT1BQ5T764 474 aaKnown RBP15.08■□□□□ 0
HDAC4-214ENST00000535493 RASSF8Q8NHQ8 419 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 HDAC7Q8WUI4 952 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 JADE2Q9NQC1 790 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 LIMA1Q9UHB6 759 aaKnown RBP15.08■□□□□ 0
HDAC4-214ENST00000535493 ATRNO75882 1429 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 NUP188Q5SRE5 1749 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 PLEKHG2Q9H7P9 1386 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 KCPQ6ZWJ8 1503 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 PARP1P09874 1014 aaKnown RBP15.08■□□□□ 0
HDAC4-214ENST00000535493 NOP2P46087 812 aaKnown RBP15.08■□□□□ 0
HDAC4-214ENST00000535493 FUT2Q10981 343 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 E2F4Q16254 413 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 KCTD19Q17RG1 926 aaPredicted RBP15.08■□□□□ 0
HDAC4-214ENST00000535493 TRAPPC11Q7Z392 1133 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 IQUBQ8NA54 791 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 CAGE1Q8TC20 777 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 SAR1BQ9Y6B6 198 aa15.08■□□□□ 0
HDAC4-214ENST00000535493 TRPM3Q9HCF6 1732 aaPredicted RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 LAMB4A4D0S4 1761 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 B4DLN1 442 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 IVLP07476 585 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 XBP1P17861 261 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 FGFR2P21802 821 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 USP14P54578 494 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 PDXDC2PQ6P474 469 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 KRT26Q7Z3Y9 468 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 KIAA1328Q86T90 577 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 SLC4A9Q96Q91 983 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 RNF26Q9BY78 433 aaPredicted RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 HPCAL4Q9UM19 191 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 LUC7L2Q9Y383 392 aaKnown RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 RPN1P04843 607 aaKnown RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 SLC5A1P13866 664 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 IL2RBP14784 551 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 CXCR5P32302 372 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 SRBD1Q8N5C6 995 aaKnown RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 AFAP1L1Q8TED9 768 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 JAKMIP2Q96AA8 810 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 ZNF512BQ96KM6 892 aaPredicted RBP15.07■□□□□ 0
HDAC4-214ENST00000535493 EHD2Q9NZN4 543 aa15.07■□□□□ 0
HDAC4-214ENST00000535493 LRRC10BA6NIK2 292 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 NLRP5P59047 1200 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 SLC7A5Q01650 507 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 CTR9Q6PD62 1173 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 GOLGA6L1Q8N7Z2 621 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 OR8K1Q8NGG5 319 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 CCDC51Q96ER9 411 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 ZSCAN10Q96SZ4 725 aaPredicted RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 RWDD2AQ9UIY3 292 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 LMTK3Q96Q04 1460 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 PDE8AO60658 829 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 PRPF6O94906 941 aaKnown RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 STARD3NLO95772 234 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 PLEKP08567 350 aaPredicted RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 TRHP20396 242 aaPredicted RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 STIM1Q13586 685 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 ESR2Q92731 530 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 GPKOWQ92917 476 aaPredicted RBP eCLIP15.06■□□□□ 0
HDAC4-214ENST00000535493 FERMT2Q96AC1 680 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 RRP36Q96EU6 259 aaKnown RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 PCMTD1Q96MG8 357 aaPredicted RBP15.06■□□□□ 0
HDAC4-214ENST00000535493 GBP3Q9H0R5 595 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 ITIH6Q6UXX5 1313 aa15.06■□□□□ 0
HDAC4-214ENST00000535493 GYG1P46976 350 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms