RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 C9orf78Q9NZ63 289 aaPredicted RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 SEPT9Q9UHD8 586 aaPredicted RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 ADAMTS8Q9UP79 889 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 COG5Q9UP83 839 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 YBX2Q9Y2T7 364 aaKnown RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 RABGAP1Q9Y3P9 1069 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 ZNF236Q9UL36 1845 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 MYH2Q9UKX2 1941 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 DCDC2CA8MYV0 355 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 C19orf81C9J6K1 198 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 USP17L10C9JJH3 530 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 ASNSP08243 561 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 MFSD5Q6N075 450 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 ZNF365Q70YC5 407 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 ANKRD33Q7Z3H0 272 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 ANKK1Q8NFD2 765 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 CD320Q9NPF0 282 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 XPNPEP3Q9NQH7 507 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 TBX21Q9UL17 535 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 ZDBF2Q9HCK1 2354 aa8.06□□□□□ -1.12
CD44-237ENST00000534082 MROH7-TTC4A0A0A0MT08 1334 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 ZNF521Q96K83 1311 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 C5orf42Q9H799 3197 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 GBF1Q92538 1859 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 PRRC2BQ5JSZ5 2229 aaKnown RBP8.05□□□□□ -1.12
CD44-237ENST00000534082 APBB1O00213 710 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 APAF1O14727 1248 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 ACRP10323 421 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 RARBP10826 455 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 CSF2RAP15509 400 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 ADORA2AP29274 412 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 RHBDL3P58872 404 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 JAG1P78504 1218 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 CSPP1Q1MSJ5 1256 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 RNF180Q86T96 592 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 DPP9Q86TI2 863 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 SLF2Q8IX21 1173 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 KLHDC4Q8TBB5 520 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 LPIN2Q92539 896 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 TOX2Q96NM4 488 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 KCNH6Q9H252 994 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 MTIF3Q9H2K0 278 aaKnown RBP8.05□□□□□ -1.12
CD44-237ENST00000534082 BICC1Q9H694 974 aaKnown RBP8.05□□□□□ -1.12
CD44-237ENST00000534082 HERC5Q9UII4 1024 aaKnown RBP8.05□□□□□ -1.12
CD44-237ENST00000534082 MTCH2Q9Y6C9 303 aa8.05□□□□□ -1.12
CD44-237ENST00000534082 TRIM6-TRIM34B2RNG4 842 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 PGK1P00558 417 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 FOXK2Q01167 660 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 RALBP1Q15311 655 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 SHROOM1Q2M3G4 852 aaPredicted RBP8.04□□□□□ -1.12
CD44-237ENST00000534082 RABL6Q3YEC7 729 aaPredicted RBP8.04□□□□□ -1.12
CD44-237ENST00000534082 PRAMEF19Q5SWL8 479 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 TMEM199Q8N511 208 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 ZGPATQ8N5A5 531 aaKnown RBP8.04□□□□□ -1.12
CD44-237ENST00000534082 HLA-CQ95604 372 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 STARD7Q9NQZ5 370 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 GNL3LQ9NVN8 582 aaKnown RBP8.04□□□□□ -1.12
CD44-237ENST00000534082 BTBD7Q9P203 1132 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 DENND2AQ9ULE3 1009 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 ZBTB21Q9ULJ3 1066 aa8.04□□□□□ -1.12
CD44-237ENST00000534082 A0A0G2JMZ2 1700 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 SIPA1L1O43166 1804 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 ROBO3Q96MS0 1386 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L15C9J2P7 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L13C9JLJ4 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L11C9JVI0 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L18D6R9N7 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L22D6RA61 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L17D6RBQ6 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L19D6RCP7 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L20D6RJB6 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 SEMA3EO15041 775 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 ALDH1L1O75891 902 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 GDF11O95390 407 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 NBPF7P0C2Y1 421 aaPredicted RBP8.03□□□□□ -1.12
CD44-237ENST00000534082 MYOGP15173 224 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 POU3F3P20264 500 aaPredicted RBP8.03□□□□□ -1.12
CD44-237ENST00000534082 RABGGTBP53611 331 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L24Q0WX57 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 ZYXQ15942 572 aaKnown RBP8.03□□□□□ -1.12
CD44-237ENST00000534082 KRT40Q6A162 431 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 USP17L2Q6R6M4 530 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 ANKRD44Q8N8A2 993 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 PPP1R12CQ9BZL4 782 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 ABCF2Q9UG63 623 aa8.03□□□□□ -1.12
CD44-237ENST00000534082 GPR75-ASB3A0A0A6YYF3 556 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 RFXAPO00287 272 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 COBLO75128 1261 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 PHKA1P46020 1223 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 ACLYP53396 1101 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 ATP2B3Q16720 1220 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 LBX2Q6XYB7 198 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 GJD3Q8N144 294 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 NUP133Q8WUM0 1156 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 LENG1Q96BZ8 264 aaPredicted RBP8.02□□□□□ -1.13
CD44-237ENST00000534082 C12orf42Q96LP6 360 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 PHOX2BQ99453 314 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 FEZ1Q99689 392 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 SRCIN1Q9C0H9 1055 aa8.02□□□□□ -1.13
CD44-237ENST00000534082 DNAJC18Q9H819 358 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms