RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 CETPP11597 493 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 SLC1A4P43007 532 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 SYNE3Q6ZMZ3 975 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 TMTC2Q8N394 836 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 DCAF4Q8WV16 495 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 C12orf42Q96LP6 360 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 TANGO6Q9C0B7 1094 aa16.03■□□□□ 0.16
CD44-224ENST00000526669 MANSC4A6NHS7 340 aaPredicted RBP16.02■□□□□ 0.16
CD44-224ENST00000526669 GOLGA8AA7E2F4 631 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 BTBD19C9JJ37 291 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 WDR46O15213 610 aaKnown RBP16.02■□□□□ 0.16
CD44-224ENST00000526669 ZBTB43O43298 467 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 ST18O60284 1047 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 DDAH1O94760 285 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 BMP3P12645 472 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 CCT2P78371 535 aaKnown RBP16.02■□□□□ 0.16
CD44-224ENST00000526669 TTBK2Q6IQ55 1244 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 GPAT2Q6NUI2 795 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 STAG2Q8N3U4 1231 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 PROCA1Q8NCQ7 364 aaPredicted RBP16.02■□□□□ 0.16
CD44-224ENST00000526669 ALDH8A1Q9H2A2 487 aaPredicted RBP16.02■□□□□ 0.16
CD44-224ENST00000526669 CPVLQ9H3G5 476 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 FBXO28Q9NVF7 368 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 TPCN1Q9ULQ1 816 aa16.02■□□□□ 0.16
CD44-224ENST00000526669 RBBP6Q7Z6E9 1792 aaKnown RBP16.01■□□□□ 0.15
CD44-224ENST00000526669 TMEM232C9JQI7 657 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 PARP1P09874 1014 aaKnown RBP16.01■□□□□ 0.15
CD44-224ENST00000526669 ZNF543Q08ER8 600 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 TROAPQ12815 778 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 IKQ13123 557 aaPredicted RBP16.01■□□□□ 0.15
CD44-224ENST00000526669 NOGQ13253 232 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 GRM4Q14833 912 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 ANKRD1Q15327 319 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 FASTKD5Q7L8L6 764 aaKnown RBP16.01■□□□□ 0.15
CD44-224ENST00000526669 FAM43AQ8N2R8 423 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 FBXL16Q8N461 479 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 LPAR1Q92633 364 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 PTPN18Q99952 460 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 MAD2L2Q9UI95 211 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 SYNPO2Q9UMS6 1093 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 AGTPBP1Q9UPW5 1226 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 HPS5Q9UPZ3 1129 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 ZSWIM8A7E2V4 1837 aa16.01■□□□□ 0.15
CD44-224ENST00000526669 IGF2BP3O00425 579 aaKnown RBP eCLIP16■□□□□ 0.15
CD44-224ENST00000526669 DTNBO60941 627 aa16■□□□□ 0.15
CD44-224ENST00000526669 SNHG28P0DPA3 235 aa16■□□□□ 0.15
CD44-224ENST00000526669 PDIA3P30101 505 aaKnown RBP16■□□□□ 0.15
CD44-224ENST00000526669 SLC16A2P36021 539 aa16■□□□□ 0.15
CD44-224ENST00000526669 METAP2P50579 478 aaKnown RBP eCLIP16■□□□□ 0.15
CD44-224ENST00000526669 RTN1Q16799 776 aa16■□□□□ 0.15
CD44-224ENST00000526669 CMTR1Q8N1G2 835 aaKnown RBP16■□□□□ 0.15
CD44-224ENST00000526669 CTCFLQ8NI51 663 aaPredicted RBP16■□□□□ 0.15
CD44-224ENST00000526669 GMCL1Q96IK5 515 aa16■□□□□ 0.15
CD44-224ENST00000526669 UBA5Q9GZZ9 404 aa16■□□□□ 0.15
CD44-224ENST00000526669 NCOA5Q9HCD5 579 aaKnown RBP16■□□□□ 0.15
CD44-224ENST00000526669 PLXNB2O15031 1838 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 TESPA1A2RU30 521 aaPredicted RBP15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L15C9J2P7 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L13C9JLJ4 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L11C9JVI0 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L18D6R9N7 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L22D6RA61 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L17D6RBQ6 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L19D6RCP7 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L20D6RJB6 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 PDHXO00330 501 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 FLOT1O75955 427 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 PLEKHA8P1O95397 391 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 CALM1P0DP23 149 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 CALM2P0DP24 149 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 CALM3P0DP25 149 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 CDC27P30260 824 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 USP17L24Q0WX57 530 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 SREBF2Q12772 1141 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 ME3Q16798 604 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 ASPRV1Q53RT3 343 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 CATSPERGQ6ZRH7 1159 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 NECAB1Q8N987 351 aa15.99■□□□□ 0.15
CD44-224ENST00000526669 PALM3A6NDB9 673 aaPredicted RBP15.98■□□□□ 0.15
CD44-224ENST00000526669 PPFIA3O75145 1194 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 EVCP57679 992 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 SNAP25P60880 206 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 IRX3P78415 501 aaPredicted RBP15.98■□□□□ 0.15
CD44-224ENST00000526669 ANKRD23Q86SG2 305 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 IFNL1Q8IU54 200 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 CCDC82Q8N4S0 544 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 FANCBQ8NB91 859 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 PIBF1Q8WXW3 757 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 KIFC2Q96AC6 838 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 ZNF274Q96GC6 653 aaPredicted RBP15.98■□□□□ 0.15
CD44-224ENST00000526669 ASCC2Q9H1I8 757 aaPredicted RBP15.98■□□□□ 0.15
CD44-224ENST00000526669 SLKQ9H2G2 1235 aaPredicted RBP15.98■□□□□ 0.15
CD44-224ENST00000526669 LIMCH1Q9UPQ0 1083 aa15.98■□□□□ 0.15
CD44-224ENST00000526669 KLRF2D3W0D1 207 aa15.97■□□□□ 0.15
CD44-224ENST00000526669 DHX16O60231 1041 aaKnown RBP15.97■□□□□ 0.15
CD44-224ENST00000526669 CYP2C8P10632 490 aa15.97■□□□□ 0.15
CD44-224ENST00000526669 ADD1P35611 737 aaKnown RBP15.97■□□□□ 0.15
CD44-224ENST00000526669 STAT2P52630 851 aa15.97■□□□□ 0.15
CD44-224ENST00000526669 SCRN1Q12765 414 aa15.97■□□□□ 0.15
CD44-224ENST00000526669 PABPC4Q13310 644 aaKnown RBP eCLIP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms