RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 ZGLP1P0C6A0 271 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 TCF3P15923 654 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 GUCY2CP25092 1073 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 GIPRP48546 466 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 HK2P52789 917 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 CLEC16AQ2KHT3 1053 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 USHBP1Q8N6Y0 703 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 TCTN2Q96GX1 697 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 KRTAP4-12Q9BQ66 201 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 MKRN2Q9H000 416 aaKnown RBP6.75□□□□□ -1.33
CD44-217ENST00000525348 CCSER2Q9H7U1 834 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.75□□□□□ -1.33
CD44-217ENST00000525348 ZNF281Q9Y2X9 895 aa6.75□□□□□ -1.33
CD44-217ENST00000525348 ZNF503-AS2A6NEH8 195 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 SIGLEC6O43699 453 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 PMS1P54277 932 aaKnown RBP6.74□□□□□ -1.33
CD44-217ENST00000525348 AUHQ13825 339 aaKnown RBP6.74□□□□□ -1.33
CD44-217ENST00000525348 ZSWIM9Q86XI8 627 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 DAGLBQ8NCG7 672 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 ENOX1Q8TC92 643 aaKnown RBP6.74□□□□□ -1.33
CD44-217ENST00000525348 SHDQ96IW2 340 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 SPATA32Q96LK8 384 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 SRRTQ9BXP5 876 aaKnown RBP6.74□□□□□ -1.33
CD44-217ENST00000525348 FOXP3Q9BZS1 431 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 GFOD1Q9NXC2 390 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 INPP5FQ9Y2H2 1132 aa6.74□□□□□ -1.33
CD44-217ENST00000525348 HPXP02790 462 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 ERCC5P28715 1186 aaPredicted RBP6.73□□□□□ -1.33
CD44-217ENST00000525348 TRHRP34981 398 aaPredicted RBP6.73□□□□□ -1.33
CD44-217ENST00000525348 AFMP43652 599 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 EIF6P56537 245 aaKnown RBP6.73□□□□□ -1.33
CD44-217ENST00000525348 BBS9Q3SYG4 887 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 AXDND1Q5T1B0 1012 aaPredicted RBP6.73□□□□□ -1.33
CD44-217ENST00000525348 DCAF15Q66K64 600 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 OGFOD2Q6N063 350 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 FAM169BQ8N8A8 192 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 G6PC3Q9BUM1 346 aa6.73□□□□□ -1.33
CD44-217ENST00000525348 ASCC2Q9H1I8 757 aaPredicted RBP6.73□□□□□ -1.33
CD44-217ENST00000525348 TMEM82A0PJX8 343 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 MEIS1O00470 390 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 CTSKP43235 329 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 KCNMB1Q16558 191 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 ZPBP2Q6X784 338 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 KRTAP19-1Q8IUB9 90 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 ZNF655Q8N720 491 aaPredicted RBP6.72□□□□□ -1.33
CD44-217ENST00000525348 KIRREL1Q96J84 757 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 CHST7Q9NS84 486 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 IGSF5Q9NSI5 407 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 FAM86C1Q9NVL1 165 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 PCDHB12Q9Y5F1 795 aa6.72□□□□□ -1.33
CD44-217ENST00000525348 A0A1W2PQH9 124 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 EFEMP2O95967 443 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 TP53P04637 393 aaPredicted RBP6.71□□□□□ -1.34
CD44-217ENST00000525348 TIGD5Q53EQ6 642 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 CCDC144CPQ8IYA2 1237 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 C7orf61Q8IZ16 206 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 LIN37Q96GY3 246 aaPredicted RBP6.71□□□□□ -1.34
CD44-217ENST00000525348 SEC16BQ96JE7 1060 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 DHRS1Q96LJ7 313 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 CRBNQ96SW2 442 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 FBXL21Q9UKT6 434 aa6.71□□□□□ -1.34
CD44-217ENST00000525348 ZNF214Q9UL59 606 aaPredicted RBP6.71□□□□□ -1.34
CD44-217ENST00000525348 GLI1P08151 1106 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 SYPP08247 313 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 ATF4P18848 351 aaPredicted RBP6.7□□□□□ -1.34
CD44-217ENST00000525348 CRTC3Q6UUV7 619 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 RNF111Q6ZNA4 994 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 C19orf47Q8N9M1 422 aaKnown RBP6.7□□□□□ -1.34
CD44-217ENST00000525348 LINC00116Q8NCU8 138 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 LINC01599Q8WXQ3 324 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 CCDC120Q96HB5 630 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 C19orf44Q9H6X5 657 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 TCFL5Q9UL49 500 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 PCDHB10Q9UN67 800 aa6.7□□□□□ -1.34
CD44-217ENST00000525348 NOTOA8MTQ0 251 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 CBFA2T2O43439 604 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 FKTNO75072 461 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 CEBPAP49715 358 aaPredicted RBP6.69□□□□□ -1.34
CD44-217ENST00000525348 PDZD8Q8NEN9 1154 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 ABHD4Q8TB40 342 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 TINF2Q9BSI4 451 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 ZNF451Q9Y4E5 1061 aa6.69□□□□□ -1.34
CD44-217ENST00000525348 RPL10P27635 214 aaKnown RBP6.68□□□□□ -1.34
CD44-217ENST00000525348 TXKP42681 527 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 ZNF445P59923 1031 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 ANKRD39Q53RE8 183 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 TMEM67Q5HYA8 995 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 WAPLQ7Z5K2 1190 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 POU5F2Q8N7G0 328 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 OR6P1Q8NGX9 317 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 CPLX3Q8WVH0 158 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 MYLIPQ8WY64 445 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 KLHL6Q8WZ60 621 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 SMARCC1Q92922 1105 aaPredicted RBP6.68□□□□□ -1.34
CD44-217ENST00000525348 RNF32Q9H0A6 362 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 CAPN10Q9HC96 672 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 GP6Q9HCN6 339 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 PRR13Q9NZ81 148 aa6.68□□□□□ -1.34
CD44-217ENST00000525348 H0Y8X5 98 aa6.67□□□□□ -1.34
CD44-217ENST00000525348 ZNF205O95201 554 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms