RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 USP17L5A8MUK1 530 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 USP2O75604 605 aaPredicted RBP15.18■□□□□ 0.02
CPNE3-205ENST00000522240 PARP1P09874 1014 aaKnown RBP15.18■□□□□ 0.02
CPNE3-205ENST00000522240 PDCP20941 246 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 GPATCH4Q5T3I0 446 aaKnown RBP15.18■□□□□ 0.02
CPNE3-205ENST00000522240 MAP1SQ66K74 1059 aaPredicted RBP15.18■□□□□ 0.02
CPNE3-205ENST00000522240 CHADLQ6NUI6 762 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 GMCL1Q96IK5 515 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 RNF26Q9BY78 433 aaPredicted RBP15.18■□□□□ 0.02
CPNE3-205ENST00000522240 AS3MTQ9HBK9 375 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 PICK1Q9NRD5 415 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 CHMP5Q9NZZ3 219 aa15.18■□□□□ 0.02
CPNE3-205ENST00000522240 A0A1W2PRG0 241 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 UNCXA6NJT0 531 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 FMNL1O95466 1100 aaPredicted RBP15.17■□□□□ 0.02
CPNE3-205ENST00000522240 HSPA1AP0DMV8 641 aaKnown RBP15.17■□□□□ 0.02
CPNE3-205ENST00000522240 HSPA1BP0DMV9 641 aaKnown RBP15.17■□□□□ 0.02
CPNE3-205ENST00000522240 SMARCA1P28370 1054 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 MAP3K9P80192 1104 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 ZNF543Q08ER8 600 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 FUT2Q10981 343 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 TRIM22Q8IYM9 498 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 RGS22Q8NE09 1264 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 WDR18Q9BV38 432 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 SPZ1Q9BXG8 430 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 VCPKMTQ9H867 229 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 GOPCQ9HD26 462 aa15.17■□□□□ 0.02
CPNE3-205ENST00000522240 RBM27Q9P2N5 1060 aaKnown RBP15.17■□□□□ 0.02
CPNE3-205ENST00000522240 MYH6P13533 1939 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 F5H6K3 240 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 PLEKHA8P1O95397 391 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 NDUFB10O96000 172 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 PTPRAP18433 802 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 FKBP1BP68106 108 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 KLRC3Q07444 240 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 SSRP1Q08945 709 aaKnown RBP15.16■□□□□ 0.02
CPNE3-205ENST00000522240 VGLL4Q14135 290 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 SLFN13Q68D06 897 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 DLK2Q6UY11 383 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 ARMC9Q7Z3E5 817 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 NBPF11Q86T75 865 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 ANKRD13AQ8IZ07 590 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 FAM184AQ8NB25 1140 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 ACER1Q8TDN7 264 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 KIAA1683Q9H0B3 1180 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 ORC3Q9UBD5 711 aaPredicted RBP15.16■□□□□ 0.02
CPNE3-205ENST00000522240 CSADQ9Y600 493 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 SNCAIPQ9Y6H5 919 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 TRPM7Q96QT4 1865 aa15.16■□□□□ 0.02
CPNE3-205ENST00000522240 DEXIO95424 95 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 ECE1P42892 770 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 NUCB2P80303 420 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 CCDC96Q2M329 555 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 USP17L2Q6R6M4 530 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.15■□□□□ 0.02
CPNE3-205ENST00000522240 RASGRP2Q7LDG7 609 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 STAG2Q8N3U4 1231 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 SRBD1Q8N5C6 995 aaKnown RBP15.15■□□□□ 0.02
CPNE3-205ENST00000522240 WASF1Q92558 559 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 LPAR1Q92633 364 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 ZKSCAN4Q969J2 545 aaPredicted RBP15.15■□□□□ 0.02
CPNE3-205ENST00000522240 FEZ1Q99689 392 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.15■□□□□ 0.02
CPNE3-205ENST00000522240 FZD1Q9UP38 647 aa15.15■□□□□ 0.02
CPNE3-205ENST00000522240 LOC285556D6RIA3 1793 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 KLRF2D3W0D1 207 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 PRPF3O43395 683 aaKnown RBP15.14■□□□□ 0.01
CPNE3-205ENST00000522240 GTPBP6O43824 516 aaPredicted RBP15.14■□□□□ 0.01
CPNE3-205ENST00000522240 FDPSP14324 419 aaKnown RBP15.14■□□□□ 0.01
CPNE3-205ENST00000522240 SLC1A4P43007 532 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 USP14P54578 494 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 PRKG1Q13976 671 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 ZNF280CQ8ND82 737 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 PHKBQ93100 1093 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 DDX11Q96FC9 970 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 SLC26A6Q9BXS9 759 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 MTMR7Q9Y216 660 aa15.14■□□□□ 0.01
CPNE3-205ENST00000522240 PTPRFP10586 1907 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 USP17L10C9JJH3 530 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 TRAF5O00463 557 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 BMP3P12645 472 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 AKAP17AQ02040 695 aaKnown RBP15.13■□□□□ 0.01
CPNE3-205ENST00000522240 TTLL12Q14166 644 aaPredicted RBP15.13■□□□□ 0.01
CPNE3-205ENST00000522240 LDLRAD1Q5T700 205 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 CCDC84Q86UT8 332 aaPredicted RBP15.13■□□□□ 0.01
CPNE3-205ENST00000522240 C12orf42Q96LP6 360 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 RIOX1Q9H6W3 641 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 STK24Q9Y6E0 443 aa15.13■□□□□ 0.01
CPNE3-205ENST00000522240 FRMPD2Q68DX3 1309 aaPredicted RBP15.13■□□□□ 0.01
CPNE3-205ENST00000522240 WDR33Q9C0J8 1336 aaKnown RBP15.13■□□□□ 0.01
CPNE3-205ENST00000522240 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.12■□□□□ 0.01
CPNE3-205ENST00000522240 SPDYE5A6NIY4 337 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 C19orf81C9J6K1 198 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 WDR46O15213 610 aaKnown RBP15.12■□□□□ 0.01
CPNE3-205ENST00000522240 STX6O43752 255 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 PLA2G6O60733 806 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 BRD1O95696 1058 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 GOLGA8HP0CJ92 632 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 SYT1P21579 422 aa15.12■□□□□ 0.01
CPNE3-205ENST00000522240 LARP1BQ659C4 914 aaKnown RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms