RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 RPAP3Q9H6T3 665 aaPredicted RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 ZCCHC17Q9NP64 241 aaKnown RBP17.94■□□□□ 0.46
LSM1-203ENST00000520755 ERICH2A1L162 156 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 TBC1D8O95759 1140 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 CYP2C8P10632 490 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 OSBPP22059 807 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 EVCP57679 992 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 IRX3P78415 501 aaPredicted RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 IFIT1BQ5T764 474 aaKnown RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 SLFN13Q68D06 897 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 NOL8Q76FK4 1167 aaKnown RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 GMCL1P1Q8NEA9 526 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 PARK7Q99497 189 aaKnown RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 NUP88Q99567 741 aaPredicted RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 TANGO6Q9C0B7 1094 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 ZFYVE28Q9HCC9 887 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 SAGE1Q9NXZ1 904 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 PNMA3Q9UL41 463 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 ISY1Q9ULR0 285 aaKnown RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 SYNPO2Q9UMS6 1093 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 SLC45A1Q9Y2W3 748 aa17.93■□□□□ 0.46
LSM1-203ENST00000520755 COL11A1P12107 1806 aaPredicted RBP17.93■□□□□ 0.46
LSM1-203ENST00000520755 NID2Q14112 1375 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L15C9J2P7 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L13C9JLJ4 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L11C9JVI0 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L18D6R9N7 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L22D6RA61 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L17D6RBQ6 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L19D6RCP7 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L20D6RJB6 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 WDR46O15213 610 aaKnown RBP17.92■□□□□ 0.46
LSM1-203ENST00000520755 CA12O43570 354 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 ST18O60284 1047 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 HOXA7P31268 230 aaPredicted RBP17.92■□□□□ 0.46
LSM1-203ENST00000520755 USP17L24Q0WX57 530 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 FAM83BQ5T0W9 1011 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 APOA5Q6Q788 366 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 SMCR8Q8TEV9 937 aaPredicted RBP17.92■□□□□ 0.46
LSM1-203ENST00000520755 MYL10Q9BUA6 226 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 ASCC2Q9H1I8 757 aaPredicted RBP17.92■□□□□ 0.46
LSM1-203ENST00000520755 R3HDMLQ9H3Y0 253 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 KAT14Q9H8E8 782 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 TPCN1Q9ULQ1 816 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 A0A0G2JMZ2 1700 aa17.92■□□□□ 0.46
LSM1-203ENST00000520755 KLF18A0A0U1RQI7 1052 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 FGD1P98174 961 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 ST3GAL1Q11201 340 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 SAMD1Q6SPF0 538 aaPredicted RBP17.91■□□□□ 0.46
LSM1-203ENST00000520755 CATSPERGQ6ZRH7 1159 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 RAB11FIP4Q86YS3 637 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 ZNF654Q8IZM8 581 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 HPS5Q9UPZ3 1129 aa17.91■□□□□ 0.46
LSM1-203ENST00000520755 RBM19Q9Y4C8 960 aaKnown RBP17.91■□□□□ 0.46
LSM1-203ENST00000520755 FOXN1O15353 648 aa17.9■□□□□ 0.46
LSM1-203ENST00000520755 TROAPQ12815 778 aa17.9■□□□□ 0.46
LSM1-203ENST00000520755 PNMA1Q8ND90 353 aa17.9■□□□□ 0.46
LSM1-203ENST00000520755 SNX21Q969T3 373 aa17.9■□□□□ 0.46
LSM1-203ENST00000520755 BAZ2BQ9UIF8 2168 aaKnown RBP17.89■□□□□ 0.45
LSM1-203ENST00000520755 CCDC69A6NI79 296 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 GOLGA8BA8MQT2 603 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 FLOT1O75955 427 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 BMP3P12645 472 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 RXRAP19793 462 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 SLC1A4P43007 532 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 ANKRD1Q15327 319 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 ME3Q16798 604 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 CCDC96Q2M329 555 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 NFXL1Q6ZNB6 911 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 IL27Q8NEV9 243 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 GMCL1Q96IK5 515 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 P2RX7Q99572 595 aaKnown RBP17.89■□□□□ 0.45
LSM1-203ENST00000520755 CPA4Q9UI42 421 aa17.89■□□□□ 0.45
LSM1-203ENST00000520755 TLR2O60603 784 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 DDAH1O94760 285 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 PDIA3P30101 505 aaKnown RBP17.88■□□□□ 0.45
LSM1-203ENST00000520755 HERVK_113P62684 666 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 KCTD1Q719H9 257 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 MICU3Q86XE3 530 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 TMTC2Q8N394 836 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 DCAF4Q8WV16 495 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 CFHR5Q9BXR6 569 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 FBXO28Q9NVF7 368 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 ADGRA2Q96PE1 1338 aa17.88■□□□□ 0.45
LSM1-203ENST00000520755 SNHG28P0DPA3 235 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 PDHBP11177 359 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 COG2Q14746 738 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 ZNF274Q96GC6 653 aaPredicted RBP17.87■□□□□ 0.45
LSM1-203ENST00000520755 LIMCH1Q9UPQ0 1083 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 SLC12A7Q9Y666 1083 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 CASP8AP2Q9UKL3 1982 aa17.87■□□□□ 0.45
LSM1-203ENST00000520755 FRMPD2Q68DX3 1309 aaPredicted RBP17.87■□□□□ 0.45
LSM1-203ENST00000520755 SPDYE16A6NNV3 312 aaPredicted RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 TMEM232C9JQI7 657 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 ZBTB43O43298 467 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 HSPA8P11142 646 aaKnown RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 CTCFP49711 727 aaPredicted RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 RCAN1P53805 252 aa17.86■□□□□ 0.45
LSM1-203ENST00000520755 IKQ13123 557 aaPredicted RBP17.86■□□□□ 0.45
LSM1-203ENST00000520755 STK3Q13188 491 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms