RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RTL9Q8NET4 1388 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 SPATA31A3Q5VYP0 1347 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 PDIA3P30101 505 aaKnown RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 UTP11Q9Y3A2 253 aaKnown RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 CDK12Q9NYV4 1490 aaPredicted RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 ZMYND10O75800 440 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 CLTAP09496 248 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 GUCY2CP25092 1073 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 CTNNA1P35221 906 aaKnown RBP12.48□□□□□ -0.41
TCOF1-211ENST00000513346 RBL2Q08999 1139 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 SUPT20HQ8NEM7 779 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 PANX2Q96RD6 677 aa12.48□□□□□ -0.41
TCOF1-211ENST00000513346 KDRP35968 1356 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 PRAMEF22A3QJZ6 481 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 SOWAHDA6NJG2 315 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ENC1O14682 589 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ACTN4O43707 911 aaKnown RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ATP5DP30049 168 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 E4F1Q66K89 784 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 TEX11Q8IYF3 940 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 APPBP2Q92624 585 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 FERMT2Q96AC1 680 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 C6orf50Q9HD87 102 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 SPHKAPQ2M3C7 1700 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 B4E1Z4 1266 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 KCNJ18B7U540 433 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 KCNJ12Q14500 433 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 NLGN1Q8N2Q7 840 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 BPIFA3Q9BQP9 254 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 CXorf56Q9H5V9 222 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ADCY9O60503 1353 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 GPAA1O43292 621 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 HIP1RO75146 1068 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 TBCAO75347 108 aaKnown RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 TCIRG1Q13488 830 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ZKSCAN8Q15776 578 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 NYAP1Q6ZVC0 841 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 SPATA24Q86W54 205 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 VSIG1Q86XK7 387 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 SYCP3Q8IZU3 236 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 WDR66Q8TBY9 1149 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 IQCDQ96DY2 449 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 CLIC6Q96NY7 704 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 GGA1Q9UJY5 639 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 CCDC160A6NGH7 325 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 LUC7L3O95232 432 aaKnown RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 GLI2P10070 1586 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 CCDC25Q86WR0 208 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 SEPT12Q8IYM1 358 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 CCDC63Q8NA47 563 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ENOX1Q8TC92 643 aaKnown RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 NAP1L3Q99457 506 aaPredicted RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 MPHOSPH6Q99547 160 aaKnown RBP12.47□□□□□ -0.41
TCOF1-211ENST00000513346 YY1AP1Q9H869 796 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 PLCB1Q9NQ66 1216 aa12.47□□□□□ -0.41
TCOF1-211ENST00000513346 ADGRL3Q9HAR2 1447 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 CEP104O60308 925 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 PPP6R2O75170 966 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 PDE6BP35913 854 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 CALCOCO2Q13137 446 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 SLC9C1Q4G0N8 1177 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 TAOK1Q7L7X3 1001 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 LPIN2Q92539 896 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 HINFPQ9BQA5 517 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 MRFAP1Q9Y605 127 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 GRIPAP1Q4V328 841 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 ALS2CLQ60I27 953 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 ARMCX5Q6P1M9 558 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 RNF10Q8N5U6 811 aaKnown RBP12.46□□□□□ -0.41
TCOF1-211ENST00000513346 TBC1D5Q92609 795 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 STMN2Q93045 179 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 RRP36Q96EU6 259 aaKnown RBP12.46□□□□□ -0.41
TCOF1-211ENST00000513346 GEMIN8Q9NWZ8 242 aaKnown RBP12.46□□□□□ -0.41
TCOF1-211ENST00000513346 AFF2P51816 1311 aa12.46□□□□□ -0.41
TCOF1-211ENST00000513346 MORC3Q14149 939 aa12.46□□□□□ -0.42
TCOF1-211ENST00000513346 IQCB1Q15051 598 aa12.46□□□□□ -0.42
TCOF1-211ENST00000513346 DNAI2Q9GZS0 605 aa12.46□□□□□ -0.42
TCOF1-211ENST00000513346 CCDC170Q8IYT3 715 aa12.46□□□□□ -0.42
TCOF1-211ENST00000513346 STAMQ92783 540 aa12.46□□□□□ -0.42
TCOF1-211ENST00000513346 MADDQ8WXG6 1647 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 ERCC3P19447 782 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 ZAP70P43403 619 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 PLA2G4AP47712 749 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 DNM2P50570 870 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 PDE4DQ08499 809 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 SF3A3Q12874 501 aaKnown RBP eCLIP12.45□□□□□ -0.42
TCOF1-211ENST00000513346 RAPGEF1Q13905 1077 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 RPS6KA1Q15418 735 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 CCDC84Q86UT8 332 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-211ENST00000513346 DHX40Q8IX18 779 aaKnown RBP12.45□□□□□ -0.42
TCOF1-211ENST00000513346 ACRBPQ8NEB7 543 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 PI4K2BQ8TCG2 481 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 PLIN2Q99541 437 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 TRIM6Q9C030 488 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-211ENST00000513346 FAM184BQ9ULE4 1060 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 RPAP1Q9BWH6 1393 aaPredicted RBP12.45□□□□□ -0.42
TCOF1-211ENST00000513346 PTPRMP28827 1452 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 AGLP35573 1532 aa12.45□□□□□ -0.42
TCOF1-211ENST00000513346 NOSTRINQ8IVI9 506 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms