RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SKOR1P84550 965 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 NR1H3Q13133 447 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 GLE1Q53GS7 698 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 ESCO1Q5FWF5 840 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 H2AFVQ71UI9 128 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 TEX9Q8N6V9 391 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 NBPF3Q9H094 633 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 ZNF277Q9NRM2 450 aaPredicted RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 KIAA1468Q9P260 1216 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 IPO11Q9UI26 975 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 VWA3AA6NCI4 1184 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 KRT75O95678 551 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 INHBAP08476 426 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 RNASE9P60153 205 aaKnown RBP12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 CERS3Q8IU89 383 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 TMEM60Q9H2L4 133 aa12.29□□□□□ -0.44
LIMCH1-217ENST00000512946 ADCY2Q08462 1091 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 FAM133BQ5BKY9 247 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 RAB44Q7Z6P3 723 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 CDAN1Q8IWY9 1227 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 TEX11Q8IYF3 940 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 OR9Q1Q8NGQ5 310 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 PHKBQ93100 1093 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 TADA3O75528 432 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 TRPA1O75762 1119 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 NR1D1P20393 614 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 METTL14Q9HCE5 456 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 TAB2Q9NYJ8 693 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 STMN3Q9NZ72 180 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 GSTA1P08263 222 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 GSTA2P09210 222 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 MRPS15P82914 257 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 KRT25Q7Z3Z0 450 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 FAM186BQ8IYM0 893 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 SH3GL2Q99962 352 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 KIF9Q9HAQ2 790 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 TRPC5Q9UL62 973 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 EPN1Q9Y6I3 576 aaPredicted RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 CUL1Q13616 776 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 ATP2B3Q16720 1220 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 NELFBQ8WX92 580 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 LZTS2Q9BRK4 669 aa12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 DBNLQ9UJU6 430 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-217ENST00000512946 CADPSQ9ULU8 1353 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 TMED10P49755 219 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 MAP3K10Q02779 954 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 RNF207Q6ZRF8 634 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 TDRD7Q8NHU6 1098 aaKnown RBP12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 PBKQ96KB5 322 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 NT5C3AQ9H0P0 336 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 PAG1Q9NWQ8 432 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 NDE1Q9NXR1 346 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 TRPC6Q9Y210 931 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 MAP3K2Q9Y2U5 619 aa12.27□□□□□ -0.44
LIMCH1-217ENST00000512946 PRPF6O94906 941 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 CYP7A1P22680 504 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 TNNI2P48788 182 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 BEND3Q5T5X7 828 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 LRRC8BQ6P9F7 803 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 YIPF3Q9GZM5 350 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 MAGEF1Q9HAY2 307 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 BLVRAP53004 296 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 C10orf76Q5T2E6 689 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 TRIM11Q96F44 468 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 TRIM56Q9BRZ2 755 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 TBC1D23Q9NUY8 699 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 POLR2DO15514 142 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 TRPC1P48995 793 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 RRAGAQ7L523 313 aa12.27□□□□□ -0.45
LIMCH1-217ENST00000512946 MMEP08473 750 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 KRT10P13645 584 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 GUCY2DQ02846 1103 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 CEP55Q53EZ4 464 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 TTLL7Q6ZT98 887 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 C2CD5Q86YS7 1000 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 TEX2Q8IWB9 1127 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 TTC16Q8NEE8 873 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 FAM81BQ96LP2 452 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 MTRQ99707 1265 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 ZPR1O75312 459 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 P4HA1P13674 534 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 NNTQ13423 1086 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 PLCB4Q15147 1175 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 NCAPH2Q6IBW4 605 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 LZICQ8WZA0 190 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 KRT82Q9NSB4 513 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 TMOD3Q9NYL9 352 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 EEF1GP26641 437 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 DHX9Q08211 1270 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 GRAMD1BQ3KR37 738 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 ANKLE2Q86XL3 938 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 C17orf53Q8N3J3 647 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 SSH2Q76I76 1423 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 ARHGDIAP52565 204 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 MDM2Q00987 491 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 ZC3H18Q86VM9 953 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 PLEKHM2Q8IWE5 1019 aa12.26□□□□□ -0.45
LIMCH1-217ENST00000512946 CALR3Q96L12 384 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms