RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 KRT31Q15323 416 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 LONRF2Q1L5Z9 754 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 IQCA1Q86XH1 822 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 IQCDQ96DY2 449 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 DNAJC7Q99615 494 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 GBP3Q9H0R5 595 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CCDC88AQ3V6T2 1871 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 PSMD14O00487 310 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CALML3P27482 149 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 COPB1P53618 953 aaKnown RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 MTF1Q14872 753 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 SLC10A5Q5PT55 438 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 IFIT1BQ5T764 474 aaKnown RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CCDC12Q8WUD4 166 aaPredicted RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 VIPAS39Q9H9C1 493 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 BSDC1Q9NW68 430 aaPredicted RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 VPS54Q9P1Q0 977 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 L1RE1Q9UN81 338 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 BAZ2AQ9UIF9 1905 aaKnown RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CTAGE9A4FU28 777 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 LAD1O00515 517 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 EEF1GP26641 437 aaKnown RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 FXR1P51114 621 aaKnown RBP eCLIP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CDK17Q00537 523 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 TCP11X2Q5H9J9 407 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 FBXO33Q7Z6M2 555 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 HELBQ8NG08 1087 aaPredicted RBP10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 ZNF507Q8TCN5 953 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 MTRQ99707 1265 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 CUEDC2Q9H467 287 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 ATP8A2Q9NTI2 1148 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 LRP2BPQ9P2M1 347 aa10.44□□□□□ -0.74
PDGFRA-208ENST00000509490 SCG2P13521 617 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 OAS2P29728 719 aaKnown RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 PRPHP41219 470 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 PPP1R2P41236 205 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ERVK-24P63145 666 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 PAK1Q13153 545 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 GPS2Q13227 327 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ORC2Q13416 577 aaPredicted RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 MEA1Q16626 185 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 CTR9Q6PD62 1173 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 FOXR2Q6PJQ5 311 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 RUBCNQ92622 972 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 RPGRIP1Q96KN7 1286 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 NAPGQ99747 312 aaPredicted RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ZKSCAN3Q9BRR0 538 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 TSPYL1Q9H0U9 437 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 THAP9Q9H5L6 903 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 THRAP3Q9Y2W1 955 aaKnown RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 DDX60LQ5H9U9 1706 aaKnown RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 FAM205CA6NFA0 338 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 WNT7AO00755 349 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ERLIN1O75477 346 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 SEC31AO94979 1220 aaKnown RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 PLEKHA8P1O95397 391 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 BRD2P25440 801 aaKnown RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 CASP14P31944 242 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 PTGDRQ13258 359 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 IL17AQ16552 155 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 CCDC178Q5BJE1 867 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 FIGNQ5HY92 759 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 HDXQ7Z353 690 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ADSSL1Q8N142 457 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 RETREG2Q8NC44 543 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ANKRD20A12PQ8NF67 263 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ZNF384Q8TF68 577 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 DESI2Q9BSY9 194 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 CCSER1Q9C0I3 900 aa10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 ZNF330Q9Y3S2 320 aaPredicted RBP10.43□□□□□ -0.74
PDGFRA-208ENST00000509490 RRP12Q5JTH9 1297 aaKnown RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 SRBD1Q8N5C6 995 aaKnown RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 NUP133Q8WUM0 1156 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 HAUS4Q9H6D7 363 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 TCP11L1Q9NUJ3 509 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 ARPP21Q9UBL0 812 aaPredicted RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 V9GY48 417 aaPredicted RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 TARSL2A2RTX5 802 aaKnown RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 LGALS16A8MUM7 142 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 NPHP1O15259 732 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 PAPD7Q5XG87 772 aaKnown RBP10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 TRAPPC11Q7Z392 1133 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 IRF2BP1Q8IU81 584 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 CAPN11Q9UMQ6 739 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 MYH1P12882 1939 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 IRS2Q9Y4H2 1338 aa10.42□□□□□ -0.74
PDGFRA-208ENST00000509490 EXOC5O00471 708 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 RHOBTB3O94955 611 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 RPN1P04843 607 aaKnown RBP10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 MCM3P25205 808 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 AARSP49588 968 aaKnown RBP eCLIP10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 ZNF572Q7Z3I7 529 aaPredicted RBP10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 DGKHQ86XP1 1220 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 TTYH3Q9C0H2 523 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 KCNJ18B7U540 433 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 ITIH3Q06033 890 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 KCNJ12Q14500 433 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 KARSQ15046 597 aaKnown RBP10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 MIGA1Q8NAN2 632 aa10.41□□□□□ -0.74
PDGFRA-208ENST00000509490 CTCFLQ8NI51 663 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms