RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 NHSL1Q5SYE7 1610 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 KCNJ18B7U540 433 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 CYP7A1P22680 504 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 PMS1P54277 932 aaKnown RBP13.43□□□□□ -0.26
UBE3D-206ENST00000505226 KCNJ12Q14500 433 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 WHAMMP3Q1A5X7 153 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 SUSD4Q5VX71 490 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 ZNF34Q8IZ26 560 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 NELFBQ8WX92 580 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 MTA3Q9BTC8 594 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 RNF216Q9NWF9 866 aaPredicted RBP13.43□□□□□ -0.26
UBE3D-206ENST00000505226 RWDD2AQ9UIY3 292 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 COL4A1P02462 1669 aa13.43□□□□□ -0.26
UBE3D-206ENST00000505226 TRIM49BA6NDI0 452 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 POTEB2H3BUK9 544 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 NMT2O60551 498 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 SRGAP2O75044 1071 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 AKAP17AQ02040 695 aaKnown RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 BRINP3Q76B58 766 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 C10orf67Q8IYJ2 551 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 MSL3Q8N5Y2 521 aaKnown RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 IQUBQ8NA54 791 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 GUCA1BQ9UMX6 200 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 TTC26A0AVF1 554 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 PRCPP42785 496 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 TUBB2AQ13885 445 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 CADPS2Q86UW7 1296 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 SRBD1Q8N5C6 995 aaKnown RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 ESR2Q92731 530 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 TUBB2BQ9BVA1 445 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 RNF41Q9H4P4 317 aaPredicted RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 PAK1Q13153 545 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 WDR59Q6PJI9 974 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 SRLQ86TD4 932 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 DZIP3Q86Y13 1208 aaKnown RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 ANAPC4Q9UJX5 808 aa13.42□□□□□ -0.26
UBE3D-206ENST00000505226 EPN1Q9Y6I3 576 aaPredicted RBP13.42□□□□□ -0.26
UBE3D-206ENST00000505226 ERLIN1O75477 346 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 NDUFA10O95299 355 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 TRHP20396 242 aaPredicted RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 MCM7P33993 719 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 HERVK_113P62684 666 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 DYNLL1P63167 89 aaKnown RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 UBXN1Q04323 297 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 PIK3AP1Q6ZUJ8 805 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 TRAPPC11Q7Z392 1133 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 MMS19Q96T76 1030 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 BAZ2AQ9UIF9 1905 aaKnown RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 DISP2A7MBM2 1401 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 DCCP43146 1447 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 PLCH1Q4KWH8 1693 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 ATP1A1P05023 1023 aaKnown RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 PIP4K2BP78356 416 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 IFIT1BQ5T764 474 aaKnown RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 ZNF384Q8TF68 577 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 RIOK1Q9BRS2 568 aaKnown RBP13.41□□□□□ -0.26
UBE3D-206ENST00000505226 ABCF2Q9UG63 623 aa13.41□□□□□ -0.26
UBE3D-206ENST00000505226 SYF2O95926 243 aaKnown RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 XBP1P17861 261 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 WDR93Q6P2C0 686 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 CCDC102AQ96A19 550 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 RRP15Q9Y3B9 282 aaKnown RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 RTL9Q8NET4 1388 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 KAT6BQ8WYB5 2073 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 MYH13Q9UKX3 1938 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 CNTNAP5Q8WYK1 1306 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 ZC3H4Q9UPT8 1303 aaKnown RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 RCCD1A6NED2 376 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 ZNF658Q5TYW1 1059 aaPredicted RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 TMTC3Q6ZXV5 915 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 MYO1AQ9UBC5 1043 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 ITGB4P16144 1822 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 GTPBP6O43824 516 aaPredicted RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 ZMYND10O75800 440 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 RPN1P04843 607 aaKnown RBP13.4□□□□□ -0.26
UBE3D-206ENST00000505226 C4orf32Q8N8J7 132 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 EEF2KMTQ96G04 330 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 GDAP1L1Q96MZ0 367 aa13.4□□□□□ -0.26
UBE3D-206ENST00000505226 MAGEB6P1A0A0J9YX57 407 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 PARP1P09874 1014 aaKnown RBP13.39□□□□□ -0.27
UBE3D-206ENST00000505226 LRRC31Q6UY01 552 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 CATIPQ7Z7H3 387 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 PLEKHA4Q9H4M7 779 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 CICQ96RK0 1608 aaPredicted RBP13.39□□□□□ -0.27
UBE3D-206ENST00000505226 DUOX1Q9NRD9 1551 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 COL1A1P02452 1464 aaPredicted RBP13.39□□□□□ -0.27
UBE3D-206ENST00000505226 RASSF10A6NK89 507 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 EIF3JO75822 258 aaKnown RBP13.39□□□□□ -0.27
UBE3D-206ENST00000505226 EVA1CP58658 441 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 PPP2R5BQ15173 497 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 ZNF507Q8TCN5 953 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 LRRC15Q8TF66 581 aa13.39□□□□□ -0.27
UBE3D-206ENST00000505226 RIN2Q8WYP3 895 aaPredicted RBP13.39□□□□□ -0.27
UBE3D-206ENST00000505226 PP2D1A8MPX8 630 aa13.38□□□□□ -0.27
UBE3D-206ENST00000505226 ERVV-1B6SEH8 477 aa13.38□□□□□ -0.27
UBE3D-206ENST00000505226 PSMD14O00487 310 aa13.38□□□□□ -0.27
UBE3D-206ENST00000505226 NKRFO15226 690 aaKnown RBP eCLIP13.38□□□□□ -0.27
UBE3D-206ENST00000505226 MYBL2P10244 700 aa13.38□□□□□ -0.27
UBE3D-206ENST00000505226 GYG1P46976 350 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms