RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.29■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 TNRC6CQ9HCJ0 1690 aaKnown RBP18.28■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 ZNF174Q15697 407 aa18.28■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 MINPP1Q9UNW1 487 aa18.28■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CNTNAP5Q8WYK1 1306 aa18.28■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 GOLGA6L9A6NEM1 432 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PPP1R3GB7ZBB8 358 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PBX1P40424 430 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CDKAL1Q5VV42 579 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 FAM177A1Q8N128 213 aaPredicted RBP18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 SRBD1Q8N5C6 995 aaKnown RBP18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 USP17L12C9JPN9 530 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 USP17L21D6R901 530 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 DDAH1O94760 285 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 BMP15O95972 392 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CALM1P0DP23 149 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CALM2P0DP24 149 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 CALM3P0DP25 149 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 PCP11498 1178 aaKnown RBP18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 STX17P56962 302 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 IQCA1Q86XH1 822 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 NLGN1Q8N2Q7 840 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 UBXN4Q92575 508 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 KIFC2Q96AC6 838 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 FHOD1Q9Y613 1164 aa18.27■□□□□ 0.52
MSH5-SAPCD1-208ENST00000498473 GNG11P61952 73 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MAP3K9P80192 1104 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ATP2C1P98194 919 aaPredicted RBP18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MTF1Q14872 753 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CAVIN4Q5BKX8 364 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 TTC38Q5R3I4 469 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 FLAD1Q8NFF5 587 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 GSDMAQ96QA5 445 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ADD3Q9UEY8 706 aaKnown RBP18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 BAZ2BQ9UIF8 2168 aaKnown RBP18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SYNRGQ9UMZ2 1314 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 EFCAB8A8MWE9 144 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CASQ1P31415 396 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 KLHL10Q6JEL2 608 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 TPTE2Q6XPS3 522 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 FBXO33Q7Z6M2 555 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SMYD4Q8IYR2 804 aaPredicted RBP18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MNS1Q8NEH6 495 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 NSUN4Q96CB9 384 aaKnown RBP18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PANX2Q96RD6 677 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 DESI2Q9BSY9 194 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 LAMB1P07942 1786 aa18.26■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 COL24A1Q17RW2 1714 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 AKR1B15C9JRZ8 316 aaPredicted RBP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ADAMTS3O15072 1205 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 NMT2O60551 498 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ZRANB2O95218 330 aaKnown RBP eCLIP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 KLRK1P26718 216 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PTGDRQ13258 359 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 BMS1Q14692 1282 aaKnown RBP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 E2F4Q16254 413 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CELF1Q92879 486 aaKnown RBP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MRPL44Q9H9J2 332 aaKnown RBP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 XDHP47989 1333 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ORC4O43929 436 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 VEGFAP15692 232 aaPredicted RBP18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SLC20A2Q08357 652 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 RBL2Q08999 1139 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 TERF2Q15554 542 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CCDC34Q96HJ3 373 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 BRMS1Q9HCU9 246 aa18.25■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SOWAHDA6NJG2 315 aa18.24■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 IL17AQ16552 155 aa18.24■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ST7Q9NRC1 585 aa18.24■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MRFAP1Q9Y605 127 aa18.24■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MECOMQ03112 1051 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 RAD9BQ6WBX8 426 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 STAMQ92783 540 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 DCP1AQ9NPI6 582 aaPredicted RBP18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 KIAA1551Q9HCM1 1747 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SEMA3EO15041 775 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PNMA6AP0CW24 399 aaPredicted RBP18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 KARSQ15046 597 aaKnown RBP18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 FAM47AQ5JRC9 791 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 TEX2Q8IWB9 1127 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 IGSF22Q8N9C0 903 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 MTRQ99707 1265 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 QSER1Q2KHR3 1735 aa18.23■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ANKRD31Q8N7Z5 1873 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CYP2D6P10635 497 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CHRNA5P30532 468 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PDXDC2PQ6P474 469 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 EPC1Q9H2F5 836 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CHRM1P11229 460 aaPredicted RBP18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SCG2P13521 617 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 RSRC2Q7L4I2 434 aaKnown RBP18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ZNF219Q9P2Y4 722 aaPredicted RBP18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 ADGRG1Q9Y653 693 aa18.22■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 A0A0U1RQJ8 604 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 VGLL3A8MV65 326 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PLA2G4AP47712 749 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PFKFB3Q16875 520 aaPredicted RBP18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 SLC10A5Q5PT55 438 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 PIK3AP1Q6ZUJ8 805 aa18.21■□□□□ 0.51
MSH5-SAPCD1-208ENST00000498473 CTCFLQ8NI51 663 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms