RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 PRLRP16471 622 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 XBP1P17861 261 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 TNFRSF8P28908 595 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 INPP5BP32019 993 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 CYLC1P35663 651 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 DDR1Q08345 913 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 PWP2Q15269 919 aaKnown RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 TSR1Q2NL82 804 aaKnown RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 ZNF658Q5TYW1 1059 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 BCAS4Q8TDM0 211 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 RIN2Q8WYP3 895 aaPredicted RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 EPSTI1Q96J88 318 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 STRBPQ96SI9 672 aaKnown RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 TSGA10Q9BZW7 698 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 CABP5Q9NP86 173 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 TOMM22Q9NS69 142 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 BCCIPQ9P287 314 aaKnown RBP eCLIP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 LUC7L2Q9Y383 392 aaKnown RBP10.87□□□□□ -0.67
SYNE1-230ENST00000495090 RGPD5Q99666 1765 aa10.87□□□□□ -0.67
SYNE1-230ENST00000495090 TCRBV5S4A2TA0A5A2 114 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 PATL2C9JE40 543 aaKnown RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 GTPBP6O43824 516 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 FSBPO95073 299 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 APPP05067 770 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 EEF1GP26641 437 aaKnown RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 LIG3P49916 1009 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 NNTQ13423 1086 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 E2F4Q16254 413 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 AKNAD1Q5T1N1 836 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 EMBQ6PCB8 327 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 KCNV1Q6PIU1 500 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 YTHDF3Q7Z739 585 aaKnown RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 MB21D1Q8N884 522 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 RETREG2Q8NC44 543 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 ISCA1Q9BUE6 129 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 VPS16Q9H269 839 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 TAB2Q9NYJ8 693 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 HDAC6Q9UBN7 1215 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 TRIM10Q9UDY6 481 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 UBR2Q8IWV8 1755 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 XDHP47989 1333 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 PDS5AQ29RF7 1337 aaKnown RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 TTC26A0AVF1 554 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 ENC1O14682 589 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CSF1RP07333 972 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 MYBL2P10244 700 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 PDE6AP16499 860 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CDC25AP30304 524 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 GNGT1P63211 74 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CDK17Q00537 523 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 APBA1Q02410 837 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 UBXN1Q04323 297 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 TRIM28Q13263 835 aaKnown RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 EMC10Q5UCC4 262 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 RRAGBQ5VZM2 374 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CYB5RLQ6IPT4 315 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 TTLL7Q6ZT98 887 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 SMYD4Q8IYR2 804 aaPredicted RBP10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CAGE1Q8TC20 777 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 STAG1Q8WVM7 1258 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 NELFBQ8WX92 580 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 CAVIN3Q969G5 261 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 NUP58Q9BVL2 599 aa10.86□□□□□ -0.67
SYNE1-230ENST00000495090 ZNF532Q9HCE3 1301 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 SRRM3A6NNA2 597 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-230ENST00000495090 IPO7O95373 1038 aaKnown RBP10.85□□□□□ -0.67
SYNE1-230ENST00000495090 ARID4AP29374 1257 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-230ENST00000495090 KRT2P35908 639 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 MAP2K2P36507 400 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 EPHB4P54760 987 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 SETQ01105 290 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-230ENST00000495090 WTAPQ15007 396 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 PDXDC2PQ6P474 469 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 WDR59Q6PJI9 974 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 PI16Q6UXB8 463 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 KIAA1328Q86T90 577 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 ZNF507Q8TCN5 953 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 OXER1Q8TDS5 423 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 IQCDQ96DY2 449 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 PHF20Q9BVI0 1012 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 THAP9Q9H5L6 903 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 CXorf56Q9H5V9 222 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 GGA2Q9UJY4 613 aa10.85□□□□□ -0.67
SYNE1-230ENST00000495090 ERICH2A1L162 156 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 KIF1CO43896 1103 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 SRGAP2O75044 1071 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 ATP6V1AP38606 617 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 MNAT1P51948 309 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CABP4P57796 275 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 ATP2C1P98194 919 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 MFSD6Q6ZSS7 791 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 MICALCLQ6ZW33 695 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 ANKRD18AQ8IVF6 992 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 IFNL3Q8IZI9 196 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 FANCBQ8NB91 859 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 C1orf131Q8NDD1 294 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 TRIM58Q8NG06 486 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 NOC3LQ8WTT2 800 aaKnown RBP10.84□□□□□ -0.67
SYNE1-230ENST00000495090 AIDAQ96BJ3 306 aa10.84□□□□□ -0.67
SYNE1-230ENST00000495090 CABS1Q96KC9 395 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms