RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 SLPIP03973 132 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 RLBP1P12271 317 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 RGS19P49795 217 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 RPL6Q02878 288 aaKnown RBP4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 CCDC27Q2M243 656 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 RALGPS1Q5JS13 557 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 UBXN11Q5T124 520 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 MFSD4AQ8N468 514 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 CORINQ9Y5Q5 1042 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 TACC3Q9Y6A5 838 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 CAPN6Q9Y6Q1 641 aa4.91□□□□□ -1.62
DEPDC1-204ENST00000489862 SORBS3O60504 671 aa4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 VMACQ2NL98 169 aa4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 BNC2Q6ZN30 1099 aaPredicted RBP4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 MRPL41Q8IXM3 137 aaKnown RBP4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 OXR1Q8N573 874 aa4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 ACSF2Q96CM8 615 aaPredicted RBP4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 TMEM87BQ96K49 555 aa4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 KIAA1522Q9P206 1035 aaPredicted RBP4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 ST14Q9Y5Y6 855 aa4.9□□□□□ -1.62
DEPDC1-204ENST00000489862 PRICKLE3O43900 615 aaPredicted RBP4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 PF4P02776 101 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 TACR2P21452 398 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 CAMK2GQ13555 558 aaPredicted RBP4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 SLC6A19Q695T7 634 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 C22orf34Q6ZV56 151 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 MCATQ8IVS2 390 aaKnown RBP4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 PDZD8Q8NEN9 1154 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 SMPD4Q9NXE4 827 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 VTI1BQ9UEU0 232 aa4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 YBX2Q9Y2T7 364 aaKnown RBP4.9□□□□□ -1.63
DEPDC1-204ENST00000489862 UPK3BL1B0FP48 263 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 UPK3BL2E5RIL1 263 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 TRHRP34981 398 aaPredicted RBP4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 PDE4BQ07343 736 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 TNK2Q07912 1038 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 CPZQ66K79 652 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 ZNF746Q6NUN9 644 aaPredicted RBP4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 LINC01356Q8N9X3 169 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 UBE2FQ969M7 185 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 MRS2Q9HD23 443 aa4.89□□□□□ -1.63
DEPDC1-204ENST00000489862 FAM221AA4D161 298 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 F13A1P00488 732 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 PLCG1P19174 1290 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 CYP7A1P22680 504 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 TGM1P22735 817 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 LMNB2Q03252 620 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 CNKSR3Q6P9H4 555 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 TMPRSS7Q7RTY8 843 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 ZFPM1Q8IX07 1006 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 SIRT5Q9NXA8 310 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 ZSWIM5Q9P217 1185 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 ADAM30Q9UKF2 790 aa4.88□□□□□ -1.63
DEPDC1-204ENST00000489862 WASH4PA8MWX3 477 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 MINDY4BA8MYZ0 360 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 GBP2P32456 591 aaPredicted RBP4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 FAM160A1Q05DH4 1040 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 CCDC84Q86UT8 332 aaPredicted RBP4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 RELL1Q8IUW5 271 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 DNAJB8Q8NHS0 232 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 GATAD2BQ8WXI9 593 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 RHOVQ96L33 236 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 Q96M66 194 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 TMEM74Q96NL1 305 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 CEP131Q9UPN4 1083 aa4.87□□□□□ -1.63
DEPDC1-204ENST00000489862 FITM1A5D6W6 292 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 BPNT1O95861 308 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 ACVRL1P37023 503 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 KIR3DL1P43629 444 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 KCNC1P48547 511 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 SNX17Q15036 470 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 FAM13CQ8NE31 585 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 PPP1R13LQ8WUF5 828 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 NAF1Q96HR8 494 aaKnown RBP4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 RSRP1Q9BUV0 290 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 ADAMTS10Q9H324 1103 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 N4BP3O15049 544 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 ERCC3P19447 782 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 ETV3P41162 512 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 GOLM1Q8NBJ4 401 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 FBXO27Q8NI29 283 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 COX4I2Q96KJ9 171 aa4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 MBD1Q9UIS9 605 aaPredicted RBP4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 POLR3KQ9Y2Y1 108 aaPredicted RBP4.86□□□□□ -1.63
DEPDC1-204ENST00000489862 OR14I1A6ND48 311 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 CHURC1-FNTBB4DL54 471 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 HRKO00198 91 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 HMGB1P09429 215 aaKnown RBP4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 SRSF3P84103 164 aaKnown RBP4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 TMEM201Q5SNT2 666 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 SNAP47Q5SQN1 464 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 DIEXFQ68CQ4 756 aaKnown RBP4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 CYB5D2Q8WUJ1 264 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 C19orf44Q9H6X5 657 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 COPRSQ9NQ92 184 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 REV1Q9UBZ9 1251 aa4.85□□□□□ -1.63
DEPDC1-204ENST00000489862 LRRN2O75325 713 aa4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 ESR1P03372 595 aa4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 GARTP22102 1010 aa4.84□□□□□ -1.63
DEPDC1-204ENST00000489862 NR0B2Q15466 257 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms