RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 CCDC158Q5M9N0 1113 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 ALYREFQ86V81 257 aaKnown RBP11.32□□□□□ -0.6
COL17A1-207ENST00000488320 CDCA7LQ96GN5 454 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 TINF2Q9BSI4 451 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 PPP1R12CQ9BZL4 782 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 SMC4Q9NTJ3 1288 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 CNPY2Q9Y2B0 182 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.32□□□□□ -0.6
COL17A1-207ENST00000488320 ZNF236Q9UL36 1845 aa11.32□□□□□ -0.6
COL17A1-207ENST00000488320 MOXD2PA6NHM9 499 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
COL17A1-207ENST00000488320 FLOT1O75955 427 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 SLC25A27O95847 323 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 FGBP02675 491 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 POLR3DP05423 398 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-207ENST00000488320 PGK2P07205 417 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 TAL1P17542 331 aaPredicted RBP11.31□□□□□ -0.6
COL17A1-207ENST00000488320 CYP7A1P22680 504 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 KCNQ1P51787 676 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 KCTD2Q14681 263 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 SEPT2Q15019 361 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 FAM9BQ8IZU0 186 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 GLT1D1Q96MS3 346 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 TBX21Q9UL17 535 aa11.31□□□□□ -0.6
COL17A1-207ENST00000488320 ADAMTS4O75173 837 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 CYP2E1P05181 493 aaPredicted RBP11.3□□□□□ -0.6
COL17A1-207ENST00000488320 ALDH1L2Q3SY69 923 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 RASIP1Q5U651 963 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 MIGA1Q8NAN2 632 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 HERVK_113Q902F9 699 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 LENG1Q96BZ8 264 aaPredicted RBP11.3□□□□□ -0.6
COL17A1-207ENST00000488320 ATG4CQ96DT6 458 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 MEIS3Q99687 375 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 EHD4Q9H223 541 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 IL23AQ9NPF7 189 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 FAM184BQ9ULE4 1060 aa11.3□□□□□ -0.6
COL17A1-207ENST00000488320 NOB1Q9ULX3 412 aaKnown RBP11.3□□□□□ -0.6
COL17A1-207ENST00000488320 BDP1A6H8Y1 2624 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 A0A1W2PRG0 241 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 GNAI3P08754 354 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 ZNF865P0CJ78 1059 aaPredicted RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 PPP2R2DQ66LE6 453 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 OTOP2Q7RTS6 562 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 KLHDC9Q8NEP7 349 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 API5Q9BZZ5 524 aaKnown RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 SPC25Q9HBM1 224 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 DIS3Q9Y2L1 958 aaKnown RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 YBX2Q9Y2T7 364 aaKnown RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 GBF1Q92538 1859 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 MYO5AQ9Y4I1 1855 aaKnown RBP11.29□□□□□ -0.6
COL17A1-207ENST00000488320 ELP1O95163 1332 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 ZNF521Q96K83 1311 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 SYNRGQ9UMZ2 1314 aa11.29□□□□□ -0.6
COL17A1-207ENST00000488320 ARVCFO00192 962 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 ERC2O15083 957 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 IDH1O75874 414 aaKnown RBP11.28□□□□□ -0.6
COL17A1-207ENST00000488320 C6orf222P0C671 652 aaPredicted RBP11.28□□□□□ -0.6
COL17A1-207ENST00000488320 CYP2C18P33260 490 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 GUCY1A2P33402 732 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 SHMT1P34896 483 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 ZAP70P43403 619 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 CDK7P50613 346 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 PLCD1P51178 756 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 RABGGTBP53611 331 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 TMEM132BQ14DG7 1078 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 ZNF792Q3KQV3 632 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 SPICE1Q8N0Z3 855 aa11.28□□□□□ -0.6
COL17A1-207ENST00000488320 PCSK9Q8NBP7 692 aaKnown RBP11.28□□□□□ -0.6
COL17A1-207ENST00000488320 ZHX1Q9UKY1 873 aaPredicted RBP11.28□□□□□ -0.6
COL17A1-207ENST00000488320 A0A0U1RQG5 324 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-207ENST00000488320 FAM86C2PA6NEL3 165 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 ZBBXA8MT70 800 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 E9PSI1 815 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 GPR37L1O60883 481 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 IGSF3O75054 1194 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 ASGR1P07306 291 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 OS9Q13438 667 aaPredicted RBP11.27□□□□□ -0.61
COL17A1-207ENST00000488320 MAGEB6Q8N7X4 407 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 ARHGEF10LQ9HCE6 1279 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 PIH1D3Q9NQM4 214 aaKnown RBP11.27□□□□□ -0.61
COL17A1-207ENST00000488320 COG5Q9UP83 839 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 SLC4A7Q9Y6M7 1214 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 XIRP2A4UGR9 3374 aa11.27□□□□□ -0.61
COL17A1-207ENST00000488320 MYADML2A6NDP7 307 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 RFXAPO00287 272 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 DUSP11O75319 330 aaKnown RBP11.26□□□□□ -0.61
COL17A1-207ENST00000488320 MYOGP15173 224 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 STAT3P40763 770 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 GNASQ5JWF2 1037 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 KIAA1755Q5JYT7 1200 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 CCSAPQ6IQ19 270 aaPredicted RBP11.26□□□□□ -0.61
COL17A1-207ENST00000488320 RIOX2Q8IUF8 465 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 RPUSD2Q8IZ73 545 aaKnown RBP11.26□□□□□ -0.61
COL17A1-207ENST00000488320 DDX11Q96FC9 970 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 DBNDD2Q9BQY9 259 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 SH2D4AQ9H788 454 aa11.26□□□□□ -0.61
COL17A1-207ENST00000488320 SMIM22K7EJ46 135 aa11.25□□□□□ -0.61
COL17A1-207ENST00000488320 ANP32CO43423 234 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms