RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 BRINP3Q76B58 766 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 NOA1Q8NC60 698 aaKnown RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 FAM71BQ8TC56 605 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 ZSCAN10Q96SZ4 725 aaPredicted RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 RBM28Q9NW13 759 aaKnown RBP13.78□□□□□ -0.2
COL3A1-206ENST00000487010 LRP2BPQ9P2M1 347 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 LCMT1Q9UIC8 334 aa13.78□□□□□ -0.2
COL3A1-206ENST00000487010 ERVV-1B6SEH8 477 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 MYO1CO00159 1063 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 RPS6KA5O75582 802 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 CATIPQ7Z7H3 387 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 ZNF34Q8IZ26 560 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 SDR42E1Q8WUS8 393 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 NELFBQ8WX92 580 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 MTRQ99707 1265 aa13.77□□□□□ -0.21
COL3A1-206ENST00000487010 PYM1Q9BRP8 204 aaKnown RBP13.77□□□□□ -0.21
COL3A1-206ENST00000487010 EPN1Q9Y6I3 576 aaPredicted RBP13.77□□□□□ -0.21
COL3A1-206ENST00000487010 IVLP07476 585 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 CYP7A1P22680 504 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 HSP90B2PQ58FF3 399 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 IFIT1BQ5T764 474 aaKnown RBP13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ZNF658Q5TYW1 1059 aaPredicted RBP13.76□□□□□ -0.21
COL3A1-206ENST00000487010 NCAPH2Q6IBW4 605 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 CHP1Q99653 195 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ZBTB1Q9Y2K1 713 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 REXO2Q9Y3B8 237 aaKnown RBP13.76□□□□□ -0.21
COL3A1-206ENST00000487010 DISP2A7MBM2 1401 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ITGB4P16144 1822 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 LRRIQ3A6PVS8 624 aaPredicted RBP13.76□□□□□ -0.21
COL3A1-206ENST00000487010 SMIM22K7EJ46 135 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 NDUFA10O95299 355 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 UBXN1Q04323 297 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 TRAPPC11Q7Z392 1133 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ADGRA1Q86SQ6 560 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 SRLQ86TD4 932 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 CCDC102AQ96A19 550 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ZBTB9Q96C00 473 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 SLC4A9Q96Q91 983 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 RASSF4Q9H2L5 321 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 ACBD3Q9H3P7 528 aa13.76□□□□□ -0.21
COL3A1-206ENST00000487010 NHSL1Q5SYE7 1610 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 PSMD14O00487 310 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 CALM1P0DP23 149 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 CALM2P0DP24 149 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 CALM3P0DP25 149 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 TROAPQ12815 778 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 IL17AQ16552 155 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 DZIP3Q86Y13 1208 aaKnown RBP13.75□□□□□ -0.21
COL3A1-206ENST00000487010 CCDC148Q8NFR7 591 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 TRIM34Q9BYJ4 488 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 MED4Q9NPJ6 270 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 RMND1Q9NWS8 449 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 GUCA1BQ9UMX6 200 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 RRP15Q9Y3B9 282 aaKnown RBP13.75□□□□□ -0.21
COL3A1-206ENST00000487010 DLEC1Q9Y238 1755 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 DUOX1Q9NRD9 1551 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 SLIT2O94813 1529 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 MAGEB6P1A0A0J9YX57 407 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 H7C1D1 291 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 RPN1P04843 607 aaKnown RBP13.75□□□□□ -0.21
COL3A1-206ENST00000487010 USP14P54578 494 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 TMTC3Q6ZXV5 915 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 OR8K1Q8NGG5 319 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 HAUS4Q9H6D7 363 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 VIPAS39Q9H9C1 493 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 TRIM10Q9UDY6 481 aa13.75□□□□□ -0.21
COL3A1-206ENST00000487010 SOS2Q07890 1332 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-206ENST00000487010 TTC26A0AVF1 554 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 VGLL3A8MV65 326 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 TRIM66O15016 1216 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 DDAH1O94760 285 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 PRCPP42785 496 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 TRAPPC10P48553 1259 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 IRF2BP1Q8IU81 584 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 C10orf67Q8IYJ2 551 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 COL22A1Q8NFW1 1626 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-206ENST00000487010 CNTNAP5Q8WYK1 1306 aa13.74□□□□□ -0.21
COL3A1-206ENST00000487010 PARP1P09874 1014 aaKnown RBP13.73□□□□□ -0.21
COL3A1-206ENST00000487010 SUSD4Q5VX71 490 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 PIK3AP1Q6ZUJ8 805 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 IQCA1Q86XH1 822 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 MB21D1Q8N884 522 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 DNAJC7Q99615 494 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 GDAQ9Y2T3 454 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 A0A1W2PQC6 194 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 MCM3P25205 808 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 MCM7P33993 719 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 AARSP49588 968 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL3A1-206ENST00000487010 SRBD1Q8N5C6 995 aaKnown RBP13.73□□□□□ -0.21
COL3A1-206ENST00000487010 HDAC6Q9UBN7 1215 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 MAPK8IP1Q9UQF2 711 aa13.73□□□□□ -0.21
COL3A1-206ENST00000487010 LUC7L2Q9Y383 392 aaKnown RBP13.73□□□□□ -0.21
COL3A1-206ENST00000487010 ABCA3Q99758 1704 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 BAZ2AQ9UIF9 1905 aaKnown RBP13.72□□□□□ -0.21
COL3A1-206ENST00000487010 CYP2D7A0A087X1C5 515 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 LGALS16A8MUM7 142 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 ENC1O14682 589 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 PHACTR2O75167 634 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 FGRP09769 529 aa13.72□□□□□ -0.21
COL3A1-206ENST00000487010 IL6STP40189 918 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms