RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 TXNRD3Q86VQ6 643 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 CPXCR1Q8N123 301 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 NLGN1Q8N2Q7 840 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 FNBP4Q8N3X1 1017 aaPredicted RBP14.87□□□□□ -0.03
HMGN1-216ENST00000486741 CAPZA3Q96KX2 299 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 NOC4LQ9BVI4 516 aaKnown RBP14.87□□□□□ -0.03
HMGN1-216ENST00000486741 ABCC12Q96J65 1359 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 PRPF3O43395 683 aaKnown RBP14.87□□□□□ -0.03
HMGN1-216ENST00000486741 ERLIN1O75477 346 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 CFBP00751 764 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 CDK8P49336 464 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 SGMS1Q86VZ5 419 aa14.87□□□□□ -0.03
HMGN1-216ENST00000486741 CLRN2A0PK11 232 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 SMIM22K7EJ46 135 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 PPP1R12BO60237 982 aaPredicted RBP14.86□□□□□ -0.03
HMGN1-216ENST00000486741 USO1O60763 962 aaKnown RBP14.86□□□□□ -0.03
HMGN1-216ENST00000486741 CHMP4BP1P59074 171 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 TNIP1Q15025 636 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 ERMNQ8TAM6 284 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 ACBD3Q9H3P7 528 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 CENPHQ9H3R5 247 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 DCCP43146 1447 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 KIF13AQ9H1H9 1805 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 NOP2P46087 812 aaKnown RBP14.86□□□□□ -0.03
HMGN1-216ENST00000486741 GPSM2P81274 684 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 SF3B3Q15393 1217 aaKnown RBP14.86□□□□□ -0.03
HMGN1-216ENST00000486741 TMTC3Q6ZXV5 915 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 USP49Q70CQ1 688 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 STAG2Q8N3U4 1231 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 SPAG5Q96R06 1193 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 CARD6Q9BX69 1037 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 BCL2L12Q9HB09 334 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 IMPACTQ9P2X3 320 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 CAMTA1Q9Y6Y1 1673 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 GDF11O95390 407 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 ELF2Q15723 593 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 MAEAQ7L5Y9 396 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 STK32BQ9NY57 414 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 GJA3Q9Y6H8 435 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 NCAPH2Q6IBW4 605 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 CCDC42Q96M95 316 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 SLF1Q9BQI6 1058 aa14.86□□□□□ -0.03
HMGN1-216ENST00000486741 PDE6BP35913 854 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 CCDC174Q6PII3 467 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 KIF20AO95235 890 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 U2AF2P26368 475 aaKnown RBP eCLIP14.85□□□□□ -0.038e-8■■■■■ 35
HMGN1-216ENST00000486741 HERC4Q5GLZ8 1057 aaPredicted RBP14.85□□□□□ -0.03
HMGN1-216ENST00000486741 ADGRA1Q86SQ6 560 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 JDP2Q8WYK2 163 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 SERPINB13Q9UIV8 391 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 SRPRBQ9Y5M8 271 aaKnown RBP14.85□□□□□ -0.03
HMGN1-216ENST00000486741 DDX39AO00148 427 aaKnown RBP14.85□□□□□ -0.03
HMGN1-216ENST00000486741 PCP11498 1178 aaKnown RBP14.85□□□□□ -0.03
HMGN1-216ENST00000486741 NEK8Q86SG6 692 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 CLEC10AQ8IUN9 316 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 CNGA4Q8IV77 575 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 TMEM47Q9BQJ4 181 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 SLC39A2Q9NP94 309 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 HOMER2Q9NSB8 354 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 NFAT5O94916 1531 aa14.85□□□□□ -0.03
HMGN1-216ENST00000486741 MACROD2A1Z1Q3 448 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 RHOXF2BP0C7M4 288 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PRR29P0C7W0 189 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PTPREP23469 700 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 SNAP25P60880 206 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 CERKLQ49MI3 558 aaPredicted RBP14.84□□□□□ -0.03
HMGN1-216ENST00000486741 RHOXF2Q9BQY4 288 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 TICAM2Q86XR7 235 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 LZTS2Q9BRK4 669 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PSTPIP2Q9H939 334 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 ZNF215Q9UL58 517 aaPredicted RBP14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PCDHA4Q9UN74 947 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 AKAP12Q02952 1782 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 BICDL2A1A5D9 508 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 OR52Z1P0C646 297 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 CYLC1P35663 651 aaPredicted RBP14.84□□□□□ -0.03
HMGN1-216ENST00000486741 GRIN1Q05586 938 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PRKG1Q13976 671 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 MCM6Q14566 821 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 SRBD1Q8N5C6 995 aaKnown RBP14.84□□□□□ -0.03
HMGN1-216ENST00000486741 TBCKQ8TEA7 893 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 TRERF1Q96PN7 1200 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 PNPLA7Q6ZV29 1317 aa14.84□□□□□ -0.03
HMGN1-216ENST00000486741 TAF4BQ92750 862 aa14.83□□□□□ -0.03
HMGN1-216ENST00000486741 MXD3Q9BW11 206 aa14.83□□□□□ -0.03
HMGN1-216ENST00000486741 LRRC27Q9C0I9 530 aa14.83□□□□□ -0.03
HMGN1-216ENST00000486741 ARHGAP6O43182 974 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 ECM2O94769 699 aaPredicted RBP14.83□□□□□ -0.04
HMGN1-216ENST00000486741 SLFN14P0C7P3 912 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 TTLL12Q14166 644 aaPredicted RBP14.83□□□□□ -0.04
HMGN1-216ENST00000486741 RESP18Q5W5W9 173 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 KIFC2Q96AC6 838 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 RPN1P04843 607 aaKnown RBP14.83□□□□□ -0.04
HMGN1-216ENST00000486741 DCAF17Q5H9S7 520 aaPredicted RBP14.83□□□□□ -0.04
HMGN1-216ENST00000486741 PLCD3Q8N3E9 789 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 TIGD1Q96MW7 591 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 FAM207AQ9NSI2 230 aaPredicted RBP14.83□□□□□ -0.04
HMGN1-216ENST00000486741 PP2D1A8MPX8 630 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 TMCO5BA8MYB1 307 aa14.83□□□□□ -0.04
HMGN1-216ENST00000486741 TMEM232C9JQI7 657 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms