RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SIGLEC6O43699 453 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 SNW1Q13573 536 aaKnown RBP9.5□□□□□ -0.89
USP40-213ENST00000483216 TDRD10Q5VZ19 366 aaKnown RBP9.5□□□□□ -0.89
USP40-213ENST00000483216 SLC23A3Q6PIS1 610 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 TMC3Q7Z5M5 1100 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 C7orf61Q8IZ16 206 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 DAGLBQ8NCG7 672 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 HDAC8Q9BY41 377 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 ZNF408Q9H9D4 720 aa9.5□□□□□ -0.89
USP40-213ENST00000483216 CARS2Q9HA77 564 aaKnown RBP9.5□□□□□ -0.89
USP40-213ENST00000483216 SMAD7O15105 426 aaKnown RBP9.49□□□□□ -0.89
USP40-213ENST00000483216 SHOXO15266 292 aa9.49□□□□□ -0.89
USP40-213ENST00000483216 AXDND1Q5T1B0 1012 aaPredicted RBP9.49□□□□□ -0.89
USP40-213ENST00000483216 PI4K2BQ8TCG2 481 aa9.49□□□□□ -0.89
USP40-213ENST00000483216 DUSP13Q9UII6 198 aa9.49□□□□□ -0.89
USP40-213ENST00000483216 FBXL21Q9UKT6 434 aa9.49□□□□□ -0.89
USP40-213ENST00000483216 SLC7A5Q01650 507 aa9.48□□□□□ -0.89
USP40-213ENST00000483216 GNPTABQ3T906 1256 aa9.48□□□□□ -0.89
USP40-213ENST00000483216 XP32Q5T750 250 aa9.48□□□□□ -0.89
USP40-213ENST00000483216 CREG2Q8IUH2 290 aa9.48□□□□□ -0.89
USP40-213ENST00000483216 ZNF655Q8N720 491 aaPredicted RBP9.48□□□□□ -0.89
USP40-213ENST00000483216 ADGRE2Q9UHX3 823 aa9.48□□□□□ -0.89
USP40-213ENST00000483216 PRAMEF1O95521 474 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 TP53P04637 393 aaPredicted RBP9.47□□□□□ -0.89
USP40-213ENST00000483216 ZNF792Q3KQV3 632 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 DCAF15Q66K64 600 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 CBLL1Q75N03 491 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 MBNL3Q9NUK0 354 aaKnown RBP9.47□□□□□ -0.89
USP40-213ENST00000483216 ACTR10Q9NZ32 417 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 ADAMTS6Q9UKP5 1117 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 PCDHB10Q9UN67 800 aa9.47□□□□□ -0.89
USP40-213ENST00000483216 KLHL6Q8WZ60 621 aa9.46□□□□□ -0.9
USP40-213ENST00000483216 CHST7Q9NS84 486 aa9.46□□□□□ -0.9
USP40-213ENST00000483216 RNASE1P07998 156 aaKnown RBP9.45□□□□□ -0.9
USP40-213ENST00000483216 CD247P20963 164 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 LTKP29376 864 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 VHLLQ6RSH7 139 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 TCTN2Q96GX1 697 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 TANGO6Q9C0B7 1094 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 GP6Q9HCN6 339 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 GFOD1Q9NXC2 390 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 PCDHA11Q9Y5I1 949 aa9.45□□□□□ -0.9
USP40-213ENST00000483216 CBFA2T2O43439 604 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 EGR3Q06889 387 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 TCEAL1Q15170 157 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 USHBP1Q8N6Y0 703 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 HAUS7Q99871 368 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 PRDM7Q9NQW5 492 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 FAM86C1Q9NVL1 165 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 ZNF451Q9Y4E5 1061 aa9.44□□□□□ -0.9
USP40-213ENST00000483216 ATP2B1P20020 1258 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 NCAPHQ15003 741 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 KIAA1211LQ6NV74 962 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 RNF111Q6ZNA4 994 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 LINC00116Q8NCU8 138 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 CCDC120Q96HB5 630 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 ALPK1Q96QP1 1244 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 KLHL25Q9H0H3 589 aa9.43□□□□□ -0.9
USP40-213ENST00000483216 A0A087WZG4 1122 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 IRAK1P51617 712 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 ZNF445P59923 1031 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 HEATR6Q6AI08 1181 aaKnown RBP9.42□□□□□ -0.9
USP40-213ENST00000483216 ANKS3Q6ZW76 656 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 RC3H2Q9HBD1 1191 aaKnown RBP9.42□□□□□ -0.9
USP40-213ENST00000483216 MINPP1Q9UNW1 487 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 FHOD1Q9Y613 1164 aa9.42□□□□□ -0.9
USP40-213ENST00000483216 STK10O94804 968 aaKnown RBP9.41□□□□□ -0.9
USP40-213ENST00000483216 ITGA4P13612 1032 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 PCBP3P57721 371 aaKnown RBP9.41□□□□□ -0.9
USP40-213ENST00000483216 TEKQ02763 1124 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 FXNQ16595 210 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 NOL9Q5SY16 702 aaKnown RBP9.41□□□□□ -0.9
USP40-213ENST00000483216 LARP1BQ659C4 914 aaKnown RBP9.41□□□□□ -0.9
USP40-213ENST00000483216 LRRN4CLQ8ND94 238 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 ARMC5Q96C12 935 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 DSCC1Q9BVC3 393 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 WHRNQ9P202 907 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 ZNF281Q9Y2X9 895 aa9.41□□□□□ -0.9
USP40-213ENST00000483216 R3HCC1Q9Y3T6 440 aaKnown RBP9.41□□□□□ -0.9
USP40-213ENST00000483216 KLF4O43474 513 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 GSNP06396 782 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 BMP8BP34820 402 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 CTSKP43235 329 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 ZNF143P52747 638 aaPredicted RBP9.4□□□□□ -0.9
USP40-213ENST00000483216 SF3A1Q15459 793 aaKnown RBP9.4□□□□□ -0.9
USP40-213ENST00000483216 GBP3Q9H0R5 595 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 SLAMF8Q9P0V8 285 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 SUSD2Q9UGT4 822 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 TCFL5Q9UL49 500 aa9.4□□□□□ -0.9
USP40-213ENST00000483216 DNAJC25-GNG10A0A024R161 153 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 MEIS1O00470 390 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 EPHX1P07099 455 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 RALGPS1Q5JS13 557 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 C6orf15Q6UXA7 325 aaPredicted RBP9.39□□□□□ -0.91
USP40-213ENST00000483216 FAM178BQ8IXR5 827 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 HNRNPLLQ8WVV9 542 aaKnown RBP9.39□□□□□ -0.91
USP40-213ENST00000483216 FOXP3Q9BZS1 431 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 TMEM59LQ9UK28 342 aa9.39□□□□□ -0.91
USP40-213ENST00000483216 DIS3Q9Y2L1 958 aaKnown RBP9.39□□□□□ -0.91
USP40-213ENST00000483216 SSU72P8A0A1W2PR75 194 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms