RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 MICU3Q86XE3 530 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 REM2Q8IYK8 340 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 TRIM22Q8IYM9 498 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 ZKSCAN4Q969J2 545 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 RIOX1Q9H6W3 641 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 GPHNQ9NQX3 736 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 FAM217BQ9NTX9 383 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 MAD2L2Q9UI95 211 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 FEM1BQ9UK73 627 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 SCAF8Q9UPN6 1271 aaKnown RBP9.6□□□□□ -0.87
SYNE1-225ENST00000481502 SLC45A1Q9Y2W3 748 aa9.6□□□□□ -0.87
SYNE1-225ENST00000481502 TMEM88BA6NKF7 163 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 KLRF2D3W0D1 207 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 TRAF5O00463 557 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 PRPF3O43395 683 aaKnown RBP9.59□□□□□ -0.87
SYNE1-225ENST00000481502 NDUFB10O96000 172 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 SLURP2P0DP57 97 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 HOXA7P31268 230 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-225ENST00000481502 GTF2A2P52657 109 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 SPP2Q13103 211 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 PABPC4Q13310 644 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNE1-225ENST00000481502 TMTC3Q6ZXV5 915 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 SAPCD2Q86UD0 394 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 NUP133Q8WUM0 1156 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 CCDC102AQ96A19 550 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 FEZ1Q99689 392 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 SENP2Q9HC62 589 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 ZCCHC17Q9NP64 241 aaKnown RBP9.59□□□□□ -0.87
SYNE1-225ENST00000481502 HOXC10Q9NYD6 342 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 TMOD4Q9NZQ9 345 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 CIZ1Q9ULV3 898 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-225ENST00000481502 TLL2Q9Y6L7 1015 aa9.59□□□□□ -0.87
SYNE1-225ENST00000481502 TRPM7Q96QT4 1865 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 A0A0G2JLL6 359 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 UBE2Q2LH0YL09 131 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 DEXIO95424 95 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 FMNL1O95466 1100 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 CETPP11597 493 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 XBP1P17861 261 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 CDC27P30260 824 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 ADD1P35611 737 aaKnown RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 STAT2P52630 851 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 ATP2B2Q01814 1243 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 AKAP17AQ02040 695 aaKnown RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 SSRP1Q08945 709 aaKnown RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 FUT2Q10981 343 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 SNAPC2Q13487 334 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 PRRT2Q7Z6L0 340 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 CCDC83Q8IWF9 413 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 SAMD3Q8N6K7 520 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 PRPF38AQ8NAV1 312 aaKnown RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 ACER1Q8TDN7 264 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 GTF3C2Q8WUA4 911 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-225ENST00000481502 MTMR8Q96EF0 704 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 SH3GLB2Q9NR46 395 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 SMC3Q9UQE7 1217 aa9.58□□□□□ -0.88
SYNE1-225ENST00000481502 TESPA1A2RU30 521 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L15C9J2P7 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L13C9JLJ4 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L11C9JVI0 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L18D6R9N7 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L22D6RA61 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L17D6RBQ6 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L19D6RCP7 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L20D6RJB6 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 IRF6O14896 467 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 LARGE1O95461 756 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 ECE1P42892 770 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 OAZ1P54368 228 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 HUNKP57058 714 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 CCT2P78371 535 aaKnown RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 USP17L24Q0WX57 530 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 PRKG1Q13976 671 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 GALNT17Q6IS24 598 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 RGMBQ6NW40 437 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 CHRDL2Q6WN34 429 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 LBX2Q6XYB7 198 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 NBPF11Q86T75 865 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 LRRC47Q8N1G4 583 aaKnown RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 MB21D1Q8N884 522 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 NSUN7Q8NE18 718 aaKnown RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 CCDC12Q8WUD4 166 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 OPTNQ96CV9 577 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 GLT8D2Q9H1C3 349 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 ELP3Q9H9T3 547 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 CREBZFQ9NS37 354 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 EMILIN3Q9NT22 766 aa9.57□□□□□ -0.88
SYNE1-225ENST00000481502 NAP1L2Q9ULW6 460 aaPredicted RBP9.57□□□□□ -0.88
SYNE1-225ENST00000481502 ATAD5Q96QE3 1844 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 MYH4Q9Y623 1939 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 PNMA6FA0A0J9YX94 578 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 MANSC4A6NHS7 340 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-225ENST00000481502 ATP2A1O14983 1001 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 CTDNEP1O95476 244 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 VCAM1P19320 739 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 NUCB2P80303 420 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 ST3GAL1Q11201 340 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 STK3Q13188 491 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 MTMR2Q13614 643 aa9.56□□□□□ -0.88
SYNE1-225ENST00000481502 COG2Q14746 738 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms