RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 FEZ1Q99689 392 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 GLIS2Q9BZE0 524 aaPredicted RBP11.78□□□□□ -0.52
USP39-215ENST00000481409 RIOX1Q9H6W3 641 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 SH3GLB2Q9NR46 395 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 PNMA2Q9UL42 364 aa11.78□□□□□ -0.52
USP39-215ENST00000481409 SCAF8Q9UPN6 1271 aaKnown RBP11.78□□□□□ -0.52
USP39-215ENST00000481409 A0A1W2PRG0 241 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 WDR46O15213 610 aaKnown RBP11.77□□□□□ -0.53
USP39-215ENST00000481409 STX6O43752 255 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 SLURP2P0DP57 97 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 BMP3P12645 472 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 RXRAP19793 462 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 SYT1P21579 422 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 BACE1P56817 501 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 JAG1P78504 1218 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 TRIM29Q14134 588 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 SH3D19Q5HYK7 790 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 LDLRAD1Q5T700 205 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 PRAMEF18Q5VWM3 479 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.77□□□□□ -0.53
USP39-215ENST00000481409 ERO1BQ86YB8 467 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 CCDC144CPQ8IYA2 1237 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 C2orf69Q8N8R5 385 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 SPRYD3Q8NCJ5 442 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 CCDC12Q8WUD4 166 aaPredicted RBP11.77□□□□□ -0.53
USP39-215ENST00000481409 RRP36Q96EU6 259 aaKnown RBP11.77□□□□□ -0.53
USP39-215ENST00000481409 SLC26A6Q9BXS9 759 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 GPBP1L1Q9HC44 474 aaPredicted RBP11.77□□□□□ -0.53
USP39-215ENST00000481409 NMRK2Q9NPI5 230 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 CNTNAP5Q8WYK1 1306 aa11.77□□□□□ -0.53
USP39-215ENST00000481409 MYH6P13533 1939 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 CXCL11O14625 94 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 JAK2O60674 1132 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 BRD1O95696 1058 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 NDUFB10O96000 172 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 FDPSP14324 419 aaKnown RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 VGLL4Q14135 290 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 PFKFB3Q16875 520 aaPredicted RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 MAP1SQ66K74 1059 aaPredicted RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 GALNT17Q6IS24 598 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 SRBD1Q8N5C6 995 aaKnown RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 ZKSCAN4Q969J2 545 aaPredicted RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 C8orf76Q96K31 380 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 ALG1Q9BT22 464 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 ZSCAN16Q9H4T2 348 aaPredicted RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 SEC63Q9UGP8 760 aaKnown RBP11.76□□□□□ -0.53
USP39-215ENST00000481409 FEM1BQ9UK73 627 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 AFG3L2Q9Y4W6 797 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 SNCAIPQ9Y6H5 919 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 PHIPQ8WWQ0 1821 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 TRPM7Q96QT4 1865 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 UTRNP46939 3433 aa11.76□□□□□ -0.53
USP39-215ENST00000481409 SPDYE5A6NIY4 337 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 H3BQV1 296 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 PLEKHA8P1O95397 391 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 ZSCAN22P10073 491 aaPredicted RBP11.75□□□□□ -0.53
USP39-215ENST00000481409 SCG2P13521 617 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 ECE1P42892 770 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 STAT2P52630 851 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 TTLL12Q14166 644 aaPredicted RBP11.75□□□□□ -0.53
USP39-215ENST00000481409 CCDC96Q2M329 555 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 IFFO2Q5TF58 517 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 CLEC17AQ6ZS10 378 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 CLEC10AQ8IUN9 316 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 STAG2Q8N3U4 1231 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 CCDC148Q8NFR7 591 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 FBXO18Q8NFZ0 1043 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 MTMR8Q96EF0 704 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 DDX11Q96FC9 970 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 GLT8D2Q9H1C3 349 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 GBA2Q9HCG7 927 aaPredicted RBP11.75□□□□□ -0.53
USP39-215ENST00000481409 TMOD4Q9NZQ9 345 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 ZHX2Q9Y6X8 837 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 V9GY48 417 aaPredicted RBP11.75□□□□□ -0.53
USP39-215ENST00000481409 OTOFQ9HC10 1997 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 MYPNQ86TC9 1320 aa11.75□□□□□ -0.53
USP39-215ENST00000481409 ITGBL1O95965 494 aaPredicted RBP11.74□□□□□ -0.53
USP39-215ENST00000481409 POTEIP0CG38 1075 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 POTEJP0CG39 1038 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 CALML3P27482 149 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 SPP2Q13103 211 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 PPIL2Q13356 520 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 SAFBQ15424 915 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP39-215ENST00000481409 SHROOM1Q2M3G4 852 aaPredicted RBP11.74□□□□□ -0.53
USP39-215ENST00000481409 ATL3Q6DD88 541 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 PPP1R18Q6NYC8 613 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 CHRDL2Q6WN34 429 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 RAB11FIP4Q86YS3 637 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 PROCA1Q8NCQ7 364 aaPredicted RBP11.74□□□□□ -0.53
USP39-215ENST00000481409 SMC1BQ8NDV3 1235 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 ACER1Q8TDN7 264 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 PHKBQ93100 1093 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 MAF1Q9H063 256 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 BRMS1Q9HCU9 246 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 KCNH4Q9UQ05 1017 aa11.74□□□□□ -0.53
USP39-215ENST00000481409 PNMA6FA0A0J9YX94 578 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 ESYT2A0FGR8 921 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 ZBTB5O15062 677 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 CYTH3O43739 400 aa11.73□□□□□ -0.53
USP39-215ENST00000481409 MTMR2Q13614 643 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms