RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 USHBP1Q8N6Y0 703 aa7.79□□□□□ -1.16
VPS50-213ENST00000477572 PDZD8Q8NEN9 1154 aa7.79□□□□□ -1.16
VPS50-213ENST00000477572 RNF34Q969K3 372 aa7.79□□□□□ -1.16
VPS50-213ENST00000477572 TCTN2Q96GX1 697 aa7.79□□□□□ -1.16
VPS50-213ENST00000477572 SLC6A18Q96N87 628 aa7.79□□□□□ -1.16
VPS50-213ENST00000477572 MKRN2Q9H000 416 aaKnown RBP7.79□□□□□ -1.16
VPS50-213ENST00000477572 DCP1AQ9NPI6 582 aaPredicted RBP7.79□□□□□ -1.16
VPS50-213ENST00000477572 PRAMEF1O95521 474 aa7.78□□□□□ -1.16
VPS50-213ENST00000477572 RACK1P63244 317 aaKnown RBP7.78□□□□□ -1.16
VPS50-213ENST00000477572 WAPLQ7Z5K2 1190 aa7.78□□□□□ -1.16
VPS50-213ENST00000477572 OXR1Q8N573 874 aa7.78□□□□□ -1.16
VPS50-213ENST00000477572 SYTL5Q8TDW5 730 aaPredicted RBP7.78□□□□□ -1.16
VPS50-213ENST00000477572 DHX38Q92620 1227 aaKnown RBP7.78□□□□□ -1.16
VPS50-213ENST00000477572 FERD3LQ96RJ6 166 aa7.78□□□□□ -1.16
VPS50-213ENST00000477572 PPT2Q9UMR5 302 aa7.78□□□□□ -1.16
VPS50-213ENST00000477572 SSU72P8A0A1W2PR75 194 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 RECKO95980 971 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 SYPP08247 313 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 TRIM26Q12899 539 aaPredicted RBP7.77□□□□□ -1.17
VPS50-213ENST00000477572 LRRFIP1Q32MZ4 808 aaKnown RBP7.77□□□□□ -1.17
VPS50-213ENST00000477572 SIRT2Q8IXJ6 389 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 EPB41L4BQ9H329 900 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 GPR160Q9UJ42 338 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 ZMYM5Q9UJ78 669 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 FBXL21Q9UKT6 434 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 TCFL5Q9UL49 500 aa7.77□□□□□ -1.17
VPS50-213ENST00000477572 DBX1A6NMT0 343 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 MEIS3P2A8K0S8 358 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 ACRP10323 421 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 RAD51AP2Q09MP3 1159 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 C9orf131Q5VYM1 1079 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 DAGLBQ8NCG7 672 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 ENOX1Q8TC92 643 aaKnown RBP7.76□□□□□ -1.17
VPS50-213ENST00000477572 METTL5Q9NRN9 209 aaKnown RBP7.76□□□□□ -1.17
VPS50-213ENST00000477572 FAM86C1Q9NVL1 165 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 GFOD1Q9NXC2 390 aa7.76□□□□□ -1.17
VPS50-213ENST00000477572 DDX41Q9UJV9 622 aaKnown RBP7.76□□□□□ -1.17
VPS50-213ENST00000477572 FITM1A5D6W6 292 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 TNFRSF10CO14798 259 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 PSPNO60542 156 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 USP2O75604 605 aaPredicted RBP7.75□□□□□ -1.17
VPS50-213ENST00000477572 RAP1GAPP47736 663 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 PCBP3P57721 371 aaKnown RBP7.75□□□□□ -1.17
VPS50-213ENST00000477572 TDRD10Q5VZ19 366 aaKnown RBP7.75□□□□□ -1.17
VPS50-213ENST00000477572 RNF111Q6ZNA4 994 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 RUFY4Q6ZNE9 571 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 ZNF655Q8N720 491 aaPredicted RBP7.75□□□□□ -1.17
VPS50-213ENST00000477572 FBXO15Q8NCQ5 510 aaPredicted RBP7.75□□□□□ -1.17
VPS50-213ENST00000477572 G6PC3Q9BUM1 346 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 ZNRF3Q9ULT6 936 aa7.75□□□□□ -1.17
VPS50-213ENST00000477572 C9IYK1 514 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 SIGLEC6O43699 453 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 EFEMP2O95967 443 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 C1QTNF9P0C862 333 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 DUSP4Q13115 394 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 CCDC81Q6ZN84 652 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 LINC01599Q8WXQ3 324 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 CHST7Q9NS84 486 aa7.74□□□□□ -1.17
VPS50-213ENST00000477572 TMEM82A0PJX8 343 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 SCAMP3O14828 347 aaKnown RBP7.73□□□□□ -1.17
VPS50-213ENST00000477572 CCNFP41002 786 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 AUHQ13825 339 aaKnown RBP7.73□□□□□ -1.17
VPS50-213ENST00000477572 BBS9Q3SYG4 887 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 SPPL2CQ8IUH8 684 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 ZNF281Q9Y2X9 895 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 PCDHB12Q9Y5F1 795 aa7.73□□□□□ -1.17
VPS50-213ENST00000477572 NOTOA8MTQ0 251 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 KRT1P04264 644 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 PDE6BP35913 854 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 CHRNEQ04844 493 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 PAK2Q13177 524 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 SLC14A2Q15849 920 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 ZYXQ15942 572 aaKnown RBP7.72□□□□□ -1.17
VPS50-213ENST00000477572 ZNF605Q86T29 641 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 CCDC144CPQ8IYA2 1237 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 LILRA2Q8N149 483 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 ANKS4BQ8N8V4 417 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 LINC00116Q8NCU8 138 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 PPP1R16BQ96T49 567 aa7.72□□□□□ -1.17
VPS50-213ENST00000477572 SUCOQ9UBS9 1254 aaKnown RBP7.72□□□□□ -1.17
VPS50-213ENST00000477572 NFIBO00712 420 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 TP53P04637 393 aaPredicted RBP7.71□□□□□ -1.18
VPS50-213ENST00000477572 TMEM253P0C7T8 217 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 CTSKP43235 329 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 NR0B2Q15466 257 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 CRTC3Q6UUV7 619 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 CEP128Q6ZU80 1094 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 METTL16Q86W50 562 aaKnown RBP7.71□□□□□ -1.18
VPS50-213ENST00000477572 SHISA4Q96DD7 197 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 INTS4Q96HW7 963 aaKnown RBP7.71□□□□□ -1.18
VPS50-213ENST00000477572 MAP6Q96JE9 813 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 HHIPL1Q96JK4 782 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 GINM1Q9NU53 330 aa7.71□□□□□ -1.18
VPS50-213ENST00000477572 YBX2Q9Y2T7 364 aaKnown RBP7.71□□□□□ -1.18
VPS50-213ENST00000477572 ARID1BQ8NFD5 2236 aaPredicted RBP7.71□□□□□ -1.18
VPS50-213ENST00000477572 ETV2O00321 342 aaPredicted RBP7.7□□□□□ -1.18
VPS50-213ENST00000477572 TSPAN15O95858 294 aa7.7□□□□□ -1.18
VPS50-213ENST00000477572 IMPDH2P12268 514 aa7.7□□□□□ -1.18
VPS50-213ENST00000477572 SDHBP21912 280 aa7.7□□□□□ -1.18
VPS50-213ENST00000477572 KIR3DS1Q14943 382 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms