RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 PPM1BO75688 479 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 APBA3O96018 575 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 ITGAVP06756 1048 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 NFICP08651 508 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 L1CAMP32004 1257 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 FOXB2Q5VYV0 432 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 Q6ZS46 218 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 CDH24Q86UP0 819 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 ZNF227Q86WZ6 799 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 C7orf61Q8IZ16 206 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 FBLIM1Q8WUP2 373 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 PMM1Q92871 262 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 ZNF775Q96BV0 537 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-207ENST00000476169 LENG1Q96BZ8 264 aaPredicted RBP5.58□□□□□ -1.52
VPS13D-207ENST00000476169 NACC1Q96RE7 527 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 SEMA6CQ9H3T2 930 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 WHRNQ9P202 907 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 ZNF451Q9Y4E5 1061 aa5.58□□□□□ -1.52
VPS13D-207ENST00000476169 CNTNAP5Q8WYK1 1306 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 KRBA1A5PL33 1030 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 C9orf172C9J069 976 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 NOP56O00567 594 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 SLITRK5O94991 958 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 ITGA4P13612 1032 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 RXRBP28702 533 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 IREB2P48200 963 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 PPP2R2AP63151 447 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 NRG1Q02297 640 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 AUHQ13825 339 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 MAP7Q14244 749 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 FAM50AQ14320 339 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 ANKRD39Q53RE8 183 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 SGO2Q562F6 1265 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 DALRD3Q5D0E6 543 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 FAM209AQ5JX71 171 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 YOD1Q5VVQ6 348 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 TMED8Q6PL24 325 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 BEND7Q8N7W2 519 aaPredicted RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 RNF141Q8WVD5 230 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 WFDC12Q8WWY7 111 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 FAM46AQ96IP4 442 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 EXOC2Q96KP1 924 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 SPOCK3Q9BQ16 436 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 DHRS4Q9BTZ2 278 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 ASPNQ9BXN1 380 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 PRDM10Q9NQV6 1147 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 FBXL21Q9UKT6 434 aa5.57□□□□□ -1.52
VPS13D-207ENST00000476169 MRPS23Q9Y3D9 190 aaKnown RBP5.57□□□□□ -1.52
VPS13D-207ENST00000476169 TRBV23-1A0A0A0MS06 115 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 DYNC1LI2O43237 492 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 CD247P20963 164 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 NOS3P29474 1203 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 CBX2Q14781 532 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 LCE2AQ5TA79 106 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 ZNF513Q8N8E2 541 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 BVESQ8NE79 360 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 ADCY4Q8NFM4 1077 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 RIN3Q8TB24 985 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 CHAC2Q8WUX2 184 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 NINJ1Q92982 152 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 KISS1RQ969F8 398 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 UTP4Q969X6 686 aaKnown RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 MFSD3Q96ES6 412 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 UBL7Q96S82 380 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-207ENST00000476169 LGR4Q9BXB1 951 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 GP6Q9HCN6 339 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 AKT3Q9Y243 479 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 PCDHB12Q9Y5F1 795 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 EID1Q9Y6B2 187 aa5.56□□□□□ -1.52
VPS13D-207ENST00000476169 IRS4O14654 1257 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 PLD2O14939 933 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 SHOXO15266 292 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 PRODHO43272 600 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 EIF3JO75822 258 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 RAPGEF3O95398 923 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 FGFR1P11362 822 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 BMP3P12645 472 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 MAP4P27816 1152 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 CDKN1CP49918 316 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 SUMO1P63165 101 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 PABPC4Q13310 644 aaKnown RBP eCLIP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 CDK5R2Q13319 367 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 BIRC2Q13490 618 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 UVSSAQ2YD98 709 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 NOL9Q5SY16 702 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 POMZP3Q6PJE2 187 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 KRT26Q7Z3Y9 468 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 JAMLQ86YT9 394 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 SCUBE1Q8IWY4 988 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 NIM1KQ8IY84 436 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 CRACR2BQ8N4Y2 399 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 TOP6BLQ8N6T0 577 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 EZH1Q92800 747 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 VWCEQ96DN2 955 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 FBXL18Q96ME1 805 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 PRDM16Q9HAZ2 1276 aa5.55□□□□□ -1.52
VPS13D-207ENST00000476169 NCOA5Q9HCD5 579 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 TPX2Q9ULW0 747 aaKnown RBP5.55□□□□□ -1.52
VPS13D-207ENST00000476169 ATP8A1Q9Y2Q0 1164 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms