RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 UBE2Q1Q7Z7E8 422 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 CEP95Q96GE4 821 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 DEFB118Q96PH6 123 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 CRISPLD2Q9H0B8 497 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.21□□□□□ -0.13
SYNE1-221ENST00000472563 MROH8Q9H579 483 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 HMX1Q9NP08 348 aaPredicted RBP14.21□□□□□ -0.13
SYNE1-221ENST00000472563 FBXO28Q9NVF7 368 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 PPP1R9AQ9ULJ8 1098 aa14.21□□□□□ -0.13
SYNE1-221ENST00000472563 BRCA2P51587 3418 aa14.21□□□□□ -0.14
SYNE1-221ENST00000472563 ZMYM6O95789 1325 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 CCDC171Q6TFL3 1326 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 HIP1O00291 1037 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 VWA5AO00534 786 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 ORC4O43929 436 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 FGAP02671 866 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 TFRCP02786 760 aaKnown RBP14.2□□□□□ -0.14
SYNE1-221ENST00000472563 FGRP09769 529 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 HSPD1P10809 573 aaKnown RBP14.2□□□□□ -0.14
SYNE1-221ENST00000472563 ERCC3P19447 782 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 MFAP1P55081 439 aaKnown RBP14.2□□□□□ -0.14
SYNE1-221ENST00000472563 CTDSPL2Q05D32 466 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 TMEM132BQ14DG7 1078 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 FAM47AQ5JRC9 791 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 ZNF589Q86UQ0 364 aaPredicted RBP14.2□□□□□ -0.14
SYNE1-221ENST00000472563 GMCL1P1Q8NEA9 526 aa14.2□□□□□ -0.14
SYNE1-221ENST00000472563 MKI67P46013 3256 aaKnown RBP14.2□□□□□ -0.14
SYNE1-221ENST00000472563 SLC25A27O95847 323 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 PRKAR2AP13861 404 aaKnown RBP14.19□□□□□ -0.14
SYNE1-221ENST00000472563 PDE4AP27815 886 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 PLS1Q14651 629 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 CCL14Q16627 93 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 SAMD1Q6SPF0 538 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-221ENST00000472563 ABRAQ8N0Z2 381 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 NUP88Q99567 741 aaPredicted RBP14.19□□□□□ -0.14
SYNE1-221ENST00000472563 SLF1Q9BQI6 1058 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 INCENPQ9NQS7 918 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 DIAPH3Q9NSV4 1193 aa14.19□□□□□ -0.14
SYNE1-221ENST00000472563 TSPY2A6NKD2 308 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 FARP2O94887 1054 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-221ENST00000472563 COPB2P35606 906 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 STAT3P40763 770 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 CACNB2Q08289 660 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-221ENST00000472563 NCAPG2Q86XI2 1143 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 RIOX2Q8IUF8 465 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 PRPF38AQ8NAV1 312 aaKnown RBP14.18□□□□□ -0.14
SYNE1-221ENST00000472563 REPS2Q8NFH8 660 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 ZNF214Q9UL59 606 aaPredicted RBP14.18□□□□□ -0.14
SYNE1-221ENST00000472563 TACC3Q9Y6A5 838 aa14.18□□□□□ -0.14
SYNE1-221ENST00000472563 PDE4DIPQ5VU43 2346 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 RANBP6O60518 1105 aaKnown RBP14.17□□□□□ -0.14
SYNE1-221ENST00000472563 IGHA2P01877 340 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 PCP11498 1178 aaKnown RBP14.17□□□□□ -0.14
SYNE1-221ENST00000472563 ADORA2AP29274 412 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 NOVP48745 357 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 MFSD14CQ5VZR4 134 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 SLFN13Q68D06 897 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 DPP9Q86TI2 863 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 LRRC47Q8N1G4 583 aaKnown RBP14.17□□□□□ -0.14
SYNE1-221ENST00000472563 ANKLE1Q8NAG6 615 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 GMCL1Q96IK5 515 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 IL17RBQ9NRM6 502 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 SLC5A4Q9NY91 659 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 FLRT1Q9NZU1 646 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 FEM1BQ9UK73 627 aa14.17□□□□□ -0.14
SYNE1-221ENST00000472563 MYH7P12883 1935 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 COBLO75128 1261 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 FCER1AP12319 257 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 OLFML2BQ68BL8 750 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 CWC27Q6UX04 472 aaKnown RBP14.16□□□□□ -0.14
SYNE1-221ENST00000472563 NPLOC4Q8TAT6 608 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 HTATIP2Q9BUP3 242 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 TEX13BQ9BXU2 312 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 OGDHLQ9ULD0 1010 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 STX8Q9UNK0 236 aa14.16□□□□□ -0.14
SYNE1-221ENST00000472563 RBBP6Q7Z6E9 1792 aaKnown RBP14.16□□□□□ -0.14
SYNE1-221ENST00000472563 BAZ2AQ9UIF9 1905 aaKnown RBP14.15□□□□□ -0.14
SYNE1-221ENST00000472563 ATP2A1O14983 1001 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 NMT2O60551 498 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 ZBED4O75132 1171 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 BMP3P12645 472 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 AKNAD1Q5T1N1 836 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 TTC22Q5TAA0 569 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 NBPF3Q9H094 633 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 SLC38A10Q9HBR0 1119 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 TCP11L1Q9NUJ3 509 aa14.15□□□□□ -0.14
SYNE1-221ENST00000472563 ZNF213O14771 459 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 PLA2G6O60733 806 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 FDX1P10109 184 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 GSPT1P15170 499 aaKnown RBP14.14□□□□□ -0.15
SYNE1-221ENST00000472563 MCCP23508 829 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 CCND3P30281 292 aaPredicted RBP14.14□□□□□ -0.15
SYNE1-221ENST00000472563 CYP2C19P33261 490 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 SLC1A4P43007 532 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 NT5C2P49902 561 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 OAZ1P54368 228 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 HAND2P61296 217 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 KCTD2Q14681 263 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 LHX8Q68G74 356 aa14.14□□□□□ -0.15
SYNE1-221ENST00000472563 MFSD6Q6ZSS7 791 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms