RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	DNAJC7	Q99615	494 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	GPR62	Q9BZJ7	368 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	GBP3	Q9H0R5	595 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	WHRN	Q9P202	907 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZMYM5	Q9UJ78	669 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	TBX22	Q9Y458	520 aa		5.77	□□□□□ -1.49
PTCD3-209	ENST00000472044	IQCA1L	A6NCM1	817 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	PRR19	A6NJB7	356 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	GNAT3	A8MTJ3	354 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	PPM1B	O75688	479 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	CBX7	O95931	251 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	ITGA4	P13612	1032 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	NKPD1	Q17RQ9	610 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	LONRF2	Q1L5Z9	754 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	SYTL5	Q8TDW5	730 aa	Predicted RBP	5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	PRDM14	Q9GZV8	571 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	FAM86C1	Q9NVL1	165 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	PIM2	Q9P1W9	311 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	TMA7	Q9Y2S6	64 aa	Known RBP	5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	FHOD1	Q9Y613	1164 aa		5.76	□□□□□ -1.49
PTCD3-209	ENST00000472044	SIGLEC6	O43699	453 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	CAPNS1	P04632	268 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZNF445	P59923	1031 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	SNW1	Q13573	536 aa	Known RBP	5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	SPATC1	Q76KD6	591 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	LRRC47	Q8N1G4	583 aa	Known RBP	5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	LILRB2	Q8N423	598 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	ARHGEF39	Q8N4T4	335 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	DUSP15	Q9H1R2	295 aa	Predicted RBP	5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	FBXL21	Q9UKT6	434 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	DIS3	Q9Y2L1	958 aa	Known RBP	5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	LEMD3	Q9Y2U8	911 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	SNX11	Q9Y5W9	270 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	ST14	Q9Y5Y6	855 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044		U3KQE9	123 aa		5.75	□□□□□ -1.49
PTCD3-209	ENST00000472044	AGRP	O00253	132 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	CYP26A1	O43174	497 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	CEACAM5	P06731	702 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	FOSL1	P15407	271 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	CLCN7	P51798	805 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	NMI	Q13287	307 aa	Predicted RBP	5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	SV2C	Q496J9	727 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	THAP5	Q7Z6K1	395 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	JAZF1	Q86VZ6	243 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	SPACA3	Q8IXA5	215 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	DAGLB	Q8NCG7	672 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	BVES	Q8NE79	360 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	NETO1	Q8TDF5	533 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	THAP3	Q8WTV1	239 aa	Predicted RBP	5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	RNPC3	Q96LT9	517 aa	Known RBP	5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	FGD4	Q96M96	766 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	SPATA9	Q9BWV2	254 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	ASCC2	Q9H1I8	757 aa	Predicted RBP	5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	APEX2	Q9UBZ4	518 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	PLAGL2	Q9UPG8	496 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044	KDM2B	Q8NHM5	1336 aa		5.74	□□□□□ -1.49
PTCD3-209	ENST00000472044		A0A1W2PQU0	124 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	RBAK-RBAKDN	I3L0D1	243 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	SMARCA5	O60264	1052 aa	Predicted RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	ADCY3	O60266	1144 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	DIAPH1	O60610	1272 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	SSRP1	Q08945	709 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	IFI16	Q16666	785 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	C2orf27A	Q580R0	203 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZC3H12B	Q5HYM0	836 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	NOL9	Q5SY16	702 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	POMZP3	Q6PJE2	187 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	TMC3	Q7Z5M5	1100 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	ADAT2	Q7Z6V5	191 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	NLGN1	Q8N2Q7	840 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZNF655	Q8N720	491 aa	Predicted RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	FAM181A	Q8N9Y4	354 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	MRGPRX3	Q96LB0	322 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	HDAC8	Q9BY41	377 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	TRIT1	Q9H3H1	467 aa	Known RBP	5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	CHST7	Q9NS84	486 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	GFOD1	Q9NXC2	390 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	EMC9	Q9Y3B6	208 aa		5.73	□□□□□ -1.49
PTCD3-209	ENST00000472044	TMEM265	A0A087WTH1	108 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	SHISA3	A0PJX4	238 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	FAM155A	B1AL88	458 aa	Predicted RBP	5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	ENPP3	O14638	875 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	PRAMEF1	O95521	474 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	ITGAV	P06756	1048 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	GRB10	Q13322	594 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	PRSS36	Q5K4E3	855 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	SDE2	Q6IQ49	451 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	ARHGAP27	Q6ZUM4	889 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	TSPYL5	Q86VY4	417 aa	Predicted RBP	5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	LRRN4CL	Q8ND94	238 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	SH3TC2	Q8TF17	1288 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	SEMA3G	Q9NS98	782 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	GPATCH2	Q9NW75	528 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	TMEM260	Q9NX78	707 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	CGGBP1	Q9UFW8	167 aa	Predicted RBP	5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	ZC3H7B	Q9UGR2	993 aa	Known RBP	5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	PFDN2	Q9UHV9	154 aa		5.72	□□□□□ -1.49
PTCD3-209	ENST00000472044	AKT3	Q9Y243	479 aa		5.72	□□□□□ -1.49

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