RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FGAP02671 866 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 HGSNATQ68CP4 663 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 SMCR8Q8TEV9 937 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 PIK3R5Q8WYR1 880 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CLIC6Q96NY7 704 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 DACH1Q9UI36 760 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 MAN1B1Q9UKM7 699 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 A0A1B0GVL5 298 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CYP27B1O15528 508 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 ERCC3P19447 782 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 ZBED6P86452 979 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CDCA2Q69YH5 1023 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 FOXR1Q6PIV2 292 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 LY9Q9HBG7 655 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 MAP3K2Q9Y2U5 619 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 PCDHA3Q9Y5H8 950 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CHUKO15111 745 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 UBASH3AP57075 661 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 ARHGEF6Q15052 776 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CDC37Q16543 378 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 FAM228AQ86W67 206 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 EHBP1Q8NDI1 1231 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 PGM2Q96G03 612 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 TLR10Q9BXR5 811 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 SIK3Q9Y2K2 1263 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 AKAP11Q9UKA4 1901 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 PFASO15067 1338 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 ESYT2A0FGR8 921 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 SEC31AO94979 1220 aaKnown RBP6.02□□□□□ -1.44
SYNE1-220ENST00000471834 SYKP43405 635 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 TTC39AQ5SRH9 613 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 IRX2Q9BZI1 471 aaPredicted RBP6.02□□□□□ -1.44
SYNE1-220ENST00000471834 CUEDC2Q9H467 287 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 EPB41L4AQ9HCS5 686 aaPredicted RBP6.02□□□□□ -1.44
SYNE1-220ENST00000471834 ABHD10Q9NUJ1 306 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 PAG1Q9NWQ8 432 aa6.02□□□□□ -1.44
SYNE1-220ENST00000471834 A0A087X0B3 334 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 LIN7AO14910 233 aaPredicted RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SLC26A4O43511 780 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 FAM107AO95990 144 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 NUDT17P0C025 328 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 CD44P16070 742 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SLFN11Q7Z7L1 901 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 MMS19Q96T76 1030 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 EURLQ9NYK6 297 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 KLHL33A6NCF5 533 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 AKR1B15C9JRZ8 316 aaPredicted RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 GSTA1P08263 222 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 KCNA6P17658 529 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TTLL11Q8NHH1 800 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 CAGE1Q8TC20 777 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 KCNN1Q92952 543 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 HOOK2Q96ED9 719 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TCEANC2Q96MN5 208 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 PDE11AQ9HCR9 933 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 PLCB1Q9NQ66 1216 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 MIS18AQ9NYP9 233 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 HOOK1Q9UJC3 728 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SNX12Q9UMY4 172 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TNRC6CQ9HCJ0 1690 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 MYO5AQ9Y4I1 1855 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 IRS2Q9Y4H2 1338 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TRAFD1O14545 582 aaPredicted RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 CPLX1O14810 134 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 CLGNO14967 610 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 NBPF20Q3BBV1 942 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TATDN2Q93075 761 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SEC62Q99442 399 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 FAN1Q9Y2M0 1017 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SLIT2O94813 1529 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 FLT1P17948 1338 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TEX33O43247 280 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TOP1P11387 765 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 NF2P35240 595 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 PRKCIP41743 596 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 HADHBP55084 474 aaKnown RBP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 GNG11P61952 73 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 CREB5Q02930 508 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SLC9C2Q5TAH2 1124 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 FAM91A1Q658Y4 838 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 ANKRD13DQ6ZTN6 518 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 IGSF22Q8N9C0 903 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 TBC1D22AQ8WUA7 517 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 ZNF622Q969S3 477 aaKnown RBP eCLIP6.02□□□□□ -1.45
SYNE1-220ENST00000471834 ADD2P35612 726 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 OLFM4Q6UX06 510 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 LRRC55Q6ZSA7 311 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 ANKS4BQ8N8V4 417 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SCFD2Q8WU76 684 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 C8orf76Q96K31 380 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 DAAM1Q9Y4D1 1078 aa6.02□□□□□ -1.45
SYNE1-220ENST00000471834 SPATA31A5Q5VU36 1347 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SPATA31A6Q5VVP1 1343 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SPATA31A7Q8IWB4 1347 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SMARCA1P28370 1054 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 LMOD1P29536 600 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 SH3TC2Q8TF17 1288 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 BAP1Q92560 729 aa6.01□□□□□ -1.45
SYNE1-220ENST00000471834 NAPGQ99747 312 aaPredicted RBP6.01□□□□□ -1.45
SYNE1-220ENST00000471834 MYO6Q9UM54 1294 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms