RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 JAG1P78504 1218 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 LRRC41Q15345 812 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 MAPKAPK5Q8IW41 473 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 PLEKHM2Q8IWE5 1019 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 MAGEB6Q8N7X4 407 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 NECAB3Q96P71 396 aaPredicted RBP14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 TSPYL2Q9H2G4 693 aaPredicted RBP14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 OSBPL3Q9H4L5 887 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 EMILIN3Q9NT22 766 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 GINM1Q9NU53 330 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 FLT1P17948 1338 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 XIRP2A4UGR9 3374 aa14.31□□□□□ -0.12
SQSTM1-206ENST00000466342 HLA-DOAP06340 250 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 ADGRE1Q14246 886 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 OLFML2BQ68BL8 750 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L2Q6R6M4 530 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 PBX4Q9BYU1 374 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 EPHX3Q9H6B9 360 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 CXXC1Q9P0U4 656 aaPredicted RBP14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 PALD1Q9ULE6 856 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 MYH1P12882 1939 aa14.3□□□□□ -0.12
SQSTM1-206ENST00000466342 NAV1Q8NEY1 1877 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L15C9J2P7 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L13C9JLJ4 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L11C9JVI0 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L18D6R9N7 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L22D6RA61 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L17D6RBQ6 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L19D6RCP7 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L20D6RJB6 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 PDE6AP16499 860 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 IGFBP4P22692 258 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 PDE4AP27815 886 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 PBX2P40425 430 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 USP17L24Q0WX57 530 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 SLC9C2Q5TAH2 1124 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 CCDC129Q6ZRS4 1044 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 DPP9Q86TI2 863 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 ALYREFQ86V81 257 aaKnown RBP14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 CRACR2BQ8N4Y2 399 aaPredicted RBP14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 KBTBD3Q8NAB2 608 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 MIGA1Q8NAN2 632 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.29□□□□□ -0.127e-11■□□□□ 8.9
SQSTM1-206ENST00000466342 TRIM34Q9BYJ4 488 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 TMEM39AQ9NV64 488 aa14.29□□□□□ -0.12
SQSTM1-206ENST00000466342 GRXCR1A8MXD5 290 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 STRNO43815 780 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 ADD2P35612 726 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 USP5P45974 858 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 AAK1Q2M2I8 961 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 TMEM31Q5JXX7 168 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 LBX2Q6XYB7 198 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 ZNF532Q9HCE3 1301 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 PPP4R2Q9NY27 417 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 BTBD7Q9P203 1132 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 ZNF236Q9UL36 1845 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 PHF24Q9UPV7 400 aa14.28□□□□□ -0.12
SQSTM1-206ENST00000466342 TCRBV5S4A2TA0A5A2 114 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 ZSCAN25Q6NSZ9 544 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 CATSPERGQ6ZRH7 1159 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 TTC6Q86TZ1 520 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 SLC44A5Q8NCS7 719 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 C12orf42Q96LP6 360 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 RIOK1Q9BRS2 568 aaKnown RBP14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 DNAJC18Q9H819 358 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 SAP30BPQ9UHR5 308 aaKnown RBP14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 ZBTB21Q9ULJ3 1066 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 CHD7Q9P2D1 2997 aa14.27□□□□□ -0.13
SQSTM1-206ENST00000466342 PIEZO1Q92508 2521 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 MAGEB6P1A0A0J9YX57 407 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 PQBP1O60828 265 aaKnown RBP14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 GDF11O95390 407 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 TIMP1P01033 207 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 FAAP100Q0VG06 881 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 UBE3CQ15386 1083 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 SHROOM1Q2M3G4 852 aaPredicted RBP14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 FAM47AQ5JRC9 791 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 PRAMEF19Q5SWL8 479 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 RASIP1Q5U651 963 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 EVI5LQ96CN4 794 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 TOX2Q96NM4 488 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 EHD4Q9H223 541 aa14.26□□□□□ -0.13
SQSTM1-206ENST00000466342 BAZ2AQ9UIF9 1905 aaKnown RBP14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 DCDC2CA8MYV0 355 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 GPR37L1O60883 481 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 ZFYP08048 801 aaPredicted RBP14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 ADORA2AP29274 412 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 TFF2Q03403 129 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 LRRFIP1Q32MZ4 808 aaKnown RBP14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 TMEM240Q5SV17 173 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 MFSD5Q6N075 450 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 TATDN1Q6P1N9 297 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 CCDC174Q6PII3 467 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 C16orf59Q7L2K0 433 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 ANKRD33Q7Z3H0 272 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 SNX27Q96L92 541 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 FSD1Q9BTV5 496 aa14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 CRNKL1Q9BZJ0 848 aaKnown RBP14.25□□□□□ -0.13
SQSTM1-206ENST00000466342 SERPINB13Q9UIV8 391 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms