RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 CCNA1P78396 465 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 MFSD6Q6ZSS7 791 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 CCAR1Q8IX12 1150 aaKnown RBP15.44■□□□□ 0.06
COL28A1-206ENST00000465339 PAGR1Q9BTK6 254 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 INCENPQ9NQS7 918 aa15.44■□□□□ 0.06
COL28A1-206ENST00000465339 CIZ1Q9ULV3 898 aaPredicted RBP15.44■□□□□ 0.06
COL28A1-206ENST00000465339 PARP14Q460N5 1801 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 F5H6K3 240 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 RAD21O60216 631 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 FLOT1O75955 427 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 MAPK4P31152 587 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 NT5C2P49902 561 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 PRKCZQ05513 592 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 KLRC3Q07444 240 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 IRF5Q13568 498 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 Q3C1V9 767 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 TPRNQ4KMQ1 711 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 AKNAD1Q5T1N1 836 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 POTEEQ6S8J3 1075 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 MB21D1Q8N884 522 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 RNF41Q9H4P4 317 aaPredicted RBP15.43■□□□□ 0.06
COL28A1-206ENST00000465339 TOMM22Q9NS69 142 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 LAMA4Q16363 1823 aa15.43■□□□□ 0.06
COL28A1-206ENST00000465339 CNMDO75829 334 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 GRK4P32298 578 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 FLT3LGP49771 235 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 CLCN6P51797 869 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 HAND2P61296 217 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 ERICH6BQ5W0A0 696 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 STAG1Q8WVM7 1258 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 KIF12Q96FN5 646 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 GABRQQ9UN88 632 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 TACC3Q9Y6A5 838 aa15.42■□□□□ 0.06
COL28A1-206ENST00000465339 PEX10O60683 326 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 RGS19P49795 217 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 IMMTQ16891 758 aaKnown RBP15.41■□□□□ 0.06
COL28A1-206ENST00000465339 SLAIN1Q8ND83 568 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 GMCL1P1Q8NEA9 526 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 PXYLP1Q8TE99 480 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 ZNF333Q96JL9 665 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 IL17RBQ9NRM6 502 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 TCP11L1Q9NUJ3 509 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 BTBD7Q9P203 1132 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 GJD2Q9UKL4 321 aa15.41■□□□□ 0.06
COL28A1-206ENST00000465339 GALR2O43603 387 aaPredicted RBP15.4■□□□□ 0.06
COL28A1-206ENST00000465339 ADCY3O60266 1144 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 NDUFB10O96000 172 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 NOVP48745 357 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 BMP2KLQ5H9B9 411 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 RRP12Q5JTH9 1297 aaKnown RBP15.4■□□□□ 0.06
COL28A1-206ENST00000465339 FAM83BQ5T0W9 1011 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 SH3TC2Q8TF17 1288 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 ESR2Q92731 530 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 NBPF3Q9H094 633 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 PORCNQ9H237 461 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 CWC22Q9HCG8 908 aaKnown RBP15.4■□□□□ 0.06
COL28A1-206ENST00000465339 ADAMTS5Q9UNA0 930 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 STX8Q9UNK0 236 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 A0A0G2JMZ2 1700 aa15.4■□□□□ 0.06
COL28A1-206ENST00000465339 PLXNB2O15031 1838 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 COL11A1P12107 1806 aaPredicted RBP15.39■□□□□ 0.05
COL28A1-206ENST00000465339 SGSM2O43147 1006 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 PYGBP11216 843 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 SOX10P56693 466 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 GPR142Q7Z601 462 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 PLEKHH3Q7Z736 793 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 SHCBP1Q8NEM2 672 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 SOCS4Q8WXH5 440 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 TTC14Q96N46 770 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 NUDT12Q9BQG2 462 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 TMEM106CQ9BVX2 250 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 IL25Q9H293 177 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 PPP1R9AQ9ULJ8 1098 aa15.39■□□□□ 0.05
COL28A1-206ENST00000465339 RBBP6Q7Z6E9 1792 aaKnown RBP15.39■□□□□ 0.05
COL28A1-206ENST00000465339 MAP3K13O43283 966 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 STRNO43815 780 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 NMT2O60551 498 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 UBXN2AP68543 259 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 CCDC178Q5BJE1 867 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 SLFN13Q68D06 897 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 TBC1D10CQ8IV04 446 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 LRRC47Q8N1G4 583 aaKnown RBP15.38■□□□□ 0.05
COL28A1-206ENST00000465339 PRPF38AQ8NAV1 312 aaKnown RBP15.38■□□□□ 0.05
COL28A1-206ENST00000465339 ATG4CQ96DT6 458 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 NUP88Q99567 741 aaPredicted RBP15.38■□□□□ 0.05
COL28A1-206ENST00000465339 SLF1Q9BQI6 1058 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 SPATC1LQ9H0A9 340 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 FBXO28Q9NVF7 368 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 BIN2Q9UBW5 565 aaPredicted RBP15.38■□□□□ 0.05
COL28A1-206ENST00000465339 FEM1BQ9UK73 627 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 IVNS1ABPQ9Y6Y0 642 aa15.38■□□□□ 0.05
COL28A1-206ENST00000465339 KIAA0100Q14667 2235 aaKnown RBP15.37■□□□□ 0.05
COL28A1-206ENST00000465339 VWA5AO00534 786 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 TOP1P11387 765 aaKnown RBP15.37■□□□□ 0.05
COL28A1-206ENST00000465339 BMP3P12645 472 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 XRCC5P13010 732 aaKnown RBP15.37■□□□□ 0.05
COL28A1-206ENST00000465339 MORN1Q5T089 497 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 KIAA1211Q6ZU35 1233 aa15.37■□□□□ 0.05
COL28A1-206ENST00000465339 TRMT44Q8IYL2 757 aaKnown RBP15.37■□□□□ 0.05
COL28A1-206ENST00000465339 MS4A3Q96HJ5 214 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms