RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 FEZ1Q99689 392 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 KLRF2D3W0D1 207 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 PPP2R3AQ06190 1150 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 CRACR2AQ9BSW2 395 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 DBNDD1Q9H9R9 158 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 OGFRQ9NZT2 677 aa13.09□□□□□ -0.31
NPHP4-204ENST00000460696 PLCD1P51178 756 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 NONOQ15233 471 aaKnown RBP eCLIP13.08□□□□□ -0.31
NPHP4-204ENST00000460696 DALRD3Q5D0E6 543 aaKnown RBP13.08□□□□□ -0.31
NPHP4-204ENST00000460696 DYMQ7RTS9 669 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 ENAHQ8N8S7 591 aaPredicted RBP13.08□□□□□ -0.31
NPHP4-204ENST00000460696 GOLGA1Q92805 767 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 SLF1Q9BQI6 1058 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 GBP3Q9H0R5 595 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 EPB41L4AQ9HCS5 686 aaPredicted RBP13.08□□□□□ -0.31
NPHP4-204ENST00000460696 PPP2R2CQ9Y2T4 447 aa13.08□□□□□ -0.31
NPHP4-204ENST00000460696 SLC27A3Q5K4L6 730 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 ZNF34Q8IZ26 560 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 PDGFDQ9GZP0 370 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-204ENST00000460696 BSDC1Q9NW68 430 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-204ENST00000460696 SMCO2A6NFE2 343 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 PTPREP23469 700 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 ALX1Q15699 326 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 RESP18Q5W5W9 173 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 DPY19L2Q6NUT2 758 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 SGMS1Q86VZ5 419 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 CCDC42Q96M95 316 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 SPTLC3Q9NUV7 552 aa13.08□□□□□ -0.32
NPHP4-204ENST00000460696 BIN2Q9UBW5 565 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-204ENST00000460696 CT47A1Q5JQC4 288 aaPredicted RBP13.07□□□□□ -0.32
NPHP4-204ENST00000460696 CENPHQ9H3R5 247 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 SRPRBQ9Y5M8 271 aaKnown RBP13.07□□□□□ -0.32
NPHP4-204ENST00000460696 BAZ2BQ9UIF8 2168 aaKnown RBP13.07□□□□□ -0.32
NPHP4-204ENST00000460696 TMEM232C9JQI7 657 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 DDAH1O94760 285 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 SPATA1Q5VX52 437 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 NIM1KQ8IY84 436 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 TRIML1Q8N9V2 468 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 WDR19Q8NEZ3 1342 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 USP17L3A6NCW0 530 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 USP17L4A6NCW7 530 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 CCDC122Q5T0U0 273 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 IQCEQ6IPM2 695 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 USP17L1Q7RTZ2 530 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 KIAA0825Q8IV33 1275 aa13.07□□□□□ -0.32
NPHP4-204ENST00000460696 PAFAH1B1P43034 410 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 TCP10Q12799 353 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 CABP7Q86V35 215 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 TTLL6Q8N841 843 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 NOC4LQ9BVI4 516 aaKnown RBP13.06□□□□□ -0.32
NPHP4-204ENST00000460696 RNF181Q9P0P0 153 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 FRMPD2Q68DX3 1309 aaPredicted RBP13.06□□□□□ -0.32
NPHP4-204ENST00000460696 FAM205CA6NFA0 338 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 SLFN14P0C7P3 912 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 BTDP43251 543 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 RAD51AP2Q09MP3 1159 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 SV2BQ7L1I2 683 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 ENGASEQ8NFI3 743 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 CPVLQ9H3G5 476 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 PIM2Q9P1W9 311 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 LRWD1Q9UFC0 647 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 BICDL2A1A5D9 508 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 TECP42680 631 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 REXO1Q8N1G1 1221 aaKnown RBP13.06□□□□□ -0.32
NPHP4-204ENST00000460696 TXLNBQ8N3L3 684 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 CUL5Q93034 780 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 CNKSR1Q969H4 720 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 COL15A1P39059 1388 aa13.06□□□□□ -0.32
NPHP4-204ENST00000460696 PRR29P0C7W0 189 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KIF5AQ12840 1032 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 CLEC4GQ6UXB4 293 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 LRRC47Q8N1G4 583 aaKnown RBP13.05□□□□□ -0.32
NPHP4-204ENST00000460696 TAF4BQ92750 862 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 UPF1Q92900 1129 aaKnown RBP eCLIP13.05□□□□□ -0.32
NPHP4-204ENST00000460696 FAM84BQ96KN1 310 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-204ENST00000460696 ABCC12Q96J65 1359 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 MACROD2A1Z1Q3 448 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 PRPF3O43395 683 aaKnown RBP13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KRT86O43790 486 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 PHACTR2O75167 634 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 ALDH1B1P30837 517 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 MORC3Q14149 939 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 USP49Q70CQ1 688 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 CEP112Q8N8E3 955 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 SLC44A5Q8NCS7 719 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 IL17RAQ96F46 866 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 NARFQ9UHQ1 456 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KCNJ18B7U540 433 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KIF20AO95235 890 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 CASP14P31944 242 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 NOP2P46087 812 aaKnown RBP13.05□□□□□ -0.32
NPHP4-204ENST00000460696 SCNN1DP51172 638 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KCNJ12Q14500 433 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 KRT25Q7Z3Z0 450 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 DPF2Q92785 391 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 LRRC4BQ9NT99 713 aa13.05□□□□□ -0.32
NPHP4-204ENST00000460696 TCHHQ07283 1943 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 TRAF5O00463 557 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 LMAN1P49257 510 aa13.04□□□□□ -0.32
NPHP4-204ENST00000460696 KRT83P78385 493 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms