RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 DCAF4Q8WV16 495 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 BRI3BPQ8WY22 251 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 GMCL1Q96IK5 515 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 MS4A4AQ96JQ5 239 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 TANGO6Q9C0B7 1094 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 RPAP3Q9H6T3 665 aaPredicted RBP11.88□□□□□ -0.51
UPF2-204ENST00000460569 TPCN1Q9ULQ1 816 aa11.88□□□□□ -0.51
UPF2-204ENST00000460569 WDR33Q9C0J8 1336 aaKnown RBP11.87□□□□□ -0.51
UPF2-204ENST00000460569 AOC2O75106 756 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 PARP1P09874 1014 aaKnown RBP11.87□□□□□ -0.51
UPF2-204ENST00000460569 SNHG28P0DPA3 235 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 METAP2P50579 478 aaKnown RBP eCLIP11.87□□□□□ -0.51
UPF2-204ENST00000460569 EVCP57679 992 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 ZNF543Q08ER8 600 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 SREBF2Q12772 1141 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 IKQ13123 557 aaPredicted RBP11.87□□□□□ -0.51
UPF2-204ENST00000460569 STK3Q13188 491 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 MOGSQ13724 837 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 GRM4Q14833 912 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 ASPRV1Q53RT3 343 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 TREML2Q5T2D2 321 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 KCTD1Q719H9 257 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 GPCPD1Q9NPB8 672 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 AGTPBP1Q9UPW5 1226 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 RLFQ13129 1914 aa11.87□□□□□ -0.51
UPF2-204ENST00000460569 A0A0G2JMZ2 1700 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 COL11A1P12107 1806 aaPredicted RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 MYH6P13533 1939 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 BTBD19C9JJ37 291 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 CD2BP2O95400 341 aaKnown RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 LARGE1O95461 756 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 GOLGA8HP0CJ92 632 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 PDIA3P30101 505 aaKnown RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 KIF5BP33176 963 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 MCM2P49736 904 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 VEGFBP49765 207 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 RCAN1P53805 252 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 KIF23Q02241 960 aaPredicted RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 PABPC4Q13310 644 aaKnown RBP eCLIP11.86□□□□□ -0.51
UPF2-204ENST00000460569 RTN1Q16799 776 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 GPATCH4Q5T3I0 446 aaKnown RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 GPAT2Q6NUI2 795 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 SAMD1Q6SPF0 538 aaPredicted RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 ZNF274Q96GC6 653 aaPredicted RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 ZIC5Q96T25 663 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 MAP3K14Q99558 947 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 SLKQ9H2G2 1235 aaPredicted RBP11.86□□□□□ -0.51
UPF2-204ENST00000460569 MAD2L2Q9UI95 211 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 LIMCH1Q9UPQ0 1083 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 HPS5Q9UPZ3 1129 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 NID2Q14112 1375 aa11.86□□□□□ -0.51
UPF2-204ENST00000460569 TESPA1A2RU30 521 aaPredicted RBP11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L15C9J2P7 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L13C9JLJ4 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 TMEM232C9JQI7 657 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L11C9JVI0 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L18D6R9N7 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L22D6RA61 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L17D6RBQ6 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L19D6RCP7 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L20D6RJB6 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 FLOT1O75955 427 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 STAT2P52630 851 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 CCT2P78371 535 aaKnown RBP11.85□□□□□ -0.51
UPF2-204ENST00000460569 IRX3P78415 501 aaPredicted RBP11.85□□□□□ -0.51
UPF2-204ENST00000460569 USP17L24Q0WX57 530 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 ME3Q16798 604 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 TTBK2Q6IQ55 1244 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 ANKRD23Q86SG2 305 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 FAM43AQ8N2R8 423 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 STAG2Q8N3U4 1231 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 FANCBQ8NB91 859 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 NCOA5Q9HCD5 579 aaKnown RBP11.85□□□□□ -0.51
UPF2-204ENST00000460569 FBXO28Q9NVF7 368 aa11.85□□□□□ -0.51
UPF2-204ENST00000460569 RBM28Q9NW13 759 aaKnown RBP11.85□□□□□ -0.51
UPF2-204ENST00000460569 PALM3A6NDB9 673 aaPredicted RBP11.84□□□□□ -0.51
UPF2-204ENST00000460569 KLRF2D3W0D1 207 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 PDHXO00330 501 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 IGF2BP3O00425 579 aaKnown RBP eCLIP11.84□□□□□ -0.51
UPF2-204ENST00000460569 DHX16O60231 1041 aaKnown RBP11.84□□□□□ -0.51
UPF2-204ENST00000460569 PFKFB2O60825 505 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 PLEKHA8P1O95397 391 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 OSBPP22059 807 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 SLC16A2P36021 539 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 GNAQP50148 359 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 INHBEP58166 350 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 CATSPERGQ6ZRH7 1159 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 TMTC3Q6ZXV5 915 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 FAM160B2Q86V87 743 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 IFNL1Q8IU54 200 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 HSCBQ8IWL3 235 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 CHURC1Q8WUH1 139 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 KIFC2Q96AC6 838 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 ZSCAN31Q96LW9 406 aaPredicted RBP11.84□□□□□ -0.51
UPF2-204ENST00000460569 PTPN18Q99952 460 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 SLF1Q9BQI6 1058 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 ASCC2Q9H1I8 757 aaPredicted RBP11.84□□□□□ -0.51
UPF2-204ENST00000460569 CPVLQ9H3G5 476 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 FEM1BQ9UK73 627 aa11.84□□□□□ -0.51
UPF2-204ENST00000460569 PNMA3Q9UL41 463 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms