RNA–Protein interactions for RNA: ENST00000460483.5

SMNDC1-203, Transcript of survival motor neuron domain containing 1, humanhuman

TSL 3

Gene SMNDC1, Length 753 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1-203ENST00000460483 C12orf42Q96LP6 360 aa12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 ZSCAN31Q96LW9 406 aaPredicted RBP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 TMEM47Q9BQJ4 181 aa12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 ZKSCAN3Q9BRR0 538 aa12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 UPF3BQ9BZI7 483 aaKnown RBP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 RBM28Q9NW13 759 aaKnown RBP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 ISY1Q9ULR0 285 aaKnown RBP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 SLC45A1Q9Y2W3 748 aa12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 FOCADQ5VW36 1801 aa12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 DDX60LQ5H9U9 1706 aaKnown RBP12.87□□□□□ -0.35
SMNDC1-203ENST00000460483 A0A0G2JLL6 359 aaPredicted RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 SMIM22K7EJ46 135 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 ZBTB43O43298 467 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 GUCY1A2P33402 732 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 RRP1BQ14684 758 aaKnown RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 ASPRV1Q53RT3 343 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 SLFN13Q68D06 897 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 PRRT2Q7Z6L0 340 aaPredicted RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 RASAL3Q86YV0 1011 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 ZNF274Q96GC6 653 aaPredicted RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 CAPNS2Q96L46 248 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 HOXC10Q9NYD6 342 aa12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 NAP1L2Q9ULW6 460 aaPredicted RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 CTDP1Q9Y5B0 961 aaPredicted RBP12.86□□□□□ -0.35
SMNDC1-203ENST00000460483 CCL15-CCL14A0A0B4J2E2 113 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L15C9J2P7 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L13C9JLJ4 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L11C9JVI0 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L18D6R9N7 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L22D6RA61 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L17D6RBQ6 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L19D6RCP7 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L20D6RJB6 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 CDKL5O76039 1030 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 PARP1P09874 1014 aaKnown RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 SLURP2P0DP57 97 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 BMP3P12645 472 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 IRX3P78415 501 aaPredicted RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 USP17L24Q0WX57 530 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 IKQ13123 557 aaPredicted RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 SEC23AQ15436 765 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 CCL15Q16663 113 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 CHST3Q7LGC8 479 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 ZNF467Q7Z7K2 595 aaPredicted RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 FAM160B2Q86V87 743 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 BRF1Q92994 677 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 BEGAINQ9BUH8 593 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 AGXT2Q9BYV1 514 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 LY9Q9HBG7 655 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 SH2B1Q9NRF2 756 aaPredicted RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 RBM27Q9P2N5 1060 aaKnown RBP12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 FEM1BQ9UK73 627 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 AGTPBP1Q9UPW5 1226 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 TAF6LQ9Y6J9 622 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 MYH1P12882 1939 aa12.85□□□□□ -0.35
SMNDC1-203ENST00000460483 KLF18A0A0U1RQI7 1052 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 CPLX1O14810 134 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 NMT2O60551 498 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 PLA2G6O60733 806 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 HMGCS2P54868 508 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 EVCP57679 992 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 ANTXR2P58335 489 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 GRM1Q13255 1194 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 CCDC96Q2M329 555 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 GADL1Q6ZQY3 521 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 ANKRD23Q86SG2 305 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 ZNF654Q8IZM8 581 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 LRRC47Q8N1G4 583 aaKnown RBP12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 NUP133Q8WUM0 1156 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 PARK7Q99497 189 aaKnown RBP12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 LIMCH1Q9UPQ0 1083 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 MYPNQ86TC9 1320 aa12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 WDR33Q9C0J8 1336 aaKnown RBP12.84□□□□□ -0.35
SMNDC1-203ENST00000460483 TESPA1A2RU30 521 aaPredicted RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 NDUFB10O96000 172 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 SMARCA1P28370 1054 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 HOXA7P31268 230 aaPredicted RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 METAP2P50579 478 aaKnown RBP eCLIP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 STAT2P52630 851 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 JAG1P78504 1218 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 MAP2K1Q02750 393 aaPredicted RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 BECN1Q14457 450 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 COG2Q14746 738 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 ZYXQ15942 572 aaKnown RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 MB21D1Q8N884 522 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 PRPF38AQ8NAV1 312 aaKnown RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 FANCBQ8NB91 859 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 ACER1Q8TDN7 264 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 SMCR8Q8TEV9 937 aaPredicted RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 TANGO6Q9C0B7 1094 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 SLKQ9H2G2 1235 aaPredicted RBP12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 KIF3AQ9Y496 699 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 TACC3Q9Y6A5 838 aa12.83□□□□□ -0.36
SMNDC1-203ENST00000460483 LAMB1P07942 1786 aa12.82□□□□□ -0.36
SMNDC1-203ENST00000460483 A0A1W2PRG0 241 aa12.82□□□□□ -0.36
SMNDC1-203ENST00000460483 GOLGA8BA8MQT2 603 aa12.82□□□□□ -0.36
SMNDC1-203ENST00000460483 CA12O43570 354 aa12.82□□□□□ -0.36
SMNDC1-203ENST00000460483 PDHBP11177 359 aa12.82□□□□□ -0.36
SMNDC1-203ENST00000460483 VCAM1P19320 739 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms